Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3556.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,445,959	+				+0.0
3,445,959	+				+0.0
3,445,959	+				+1.4
3,445,959	+				-0.7
3,445,959	+				+1.5
3,445,959	+				-1.6
3,445,960	-				-0.1
3,445,960	-				-0.6
3,445,960	-				-0.9
3,445,960	-				+1.0
3,445,960	-				-0.4
3,445,960	-				+0.4
3,445,960	-				+0.6
3,445,960	-				-0.1
3,446,019	+				+0.6
3,446,019	+				-0.6
3,446,019	+				+0.5
3,446,020	-				+1.0
3,446,020	-				+0.6
3,446,020	-				+2.1
3,446,020	-				-0.5
3,446,020	-				-0.2
3,446,020	-				+0.3
3,446,172	+		Xcc-8004.3555.1	0.21	+0.3
3,446,367	+		Xcc-8004.3555.1	0.44	-2.3
3,446,367	+		Xcc-8004.3555.1	0.44	+0.3
3,446,367	+		Xcc-8004.3555.1	0.44	-0.9
3,446,367	+		Xcc-8004.3555.1	0.44	+0.6
3,446,368	-		Xcc-8004.3555.1	0.44	-0.4
3,446,368	-		Xcc-8004.3555.1	0.44	-1.4
3,446,368	-		Xcc-8004.3555.1	0.44	+0.8
3,446,368	-		Xcc-8004.3555.1	0.44	+0.8
3,446,457	+		Xcc-8004.3555.1	0.54	+0.1
3,446,457	+		Xcc-8004.3555.1	0.54	-0.4
3,446,457	+		Xcc-8004.3555.1	0.54	+0.2
3,446,457	+		Xcc-8004.3555.1	0.54	-0.3
3,446,457	+		Xcc-8004.3555.1	0.54	-0.5
3,446,457	+		Xcc-8004.3555.1	0.54	+1.3
3,446,457	+		Xcc-8004.3555.1	0.54	+1.4
3,446,458	-		Xcc-8004.3555.1	0.54	+0.3
3,446,458	-		Xcc-8004.3555.1	0.54	-0.8
3,446,458	-		Xcc-8004.3555.1	0.54	+0.1
3,446,458	-		Xcc-8004.3555.1	0.54	-1.7
3,446,580	+		Xcc-8004.3555.1	0.69	+0.7
3,446,580	+		Xcc-8004.3555.1	0.69	+1.5
3,446,580	+		Xcc-8004.3555.1	0.69	-0.8
3,446,580	+		Xcc-8004.3555.1	0.69	-0.4
3,446,580	+		Xcc-8004.3555.1	0.69	+0.0
3,446,672	+		Xcc-8004.3555.1	0.79	+0.1
3,446,673	-		Xcc-8004.3555.1	0.79	+0.4
3,447,181	+		Xcc-8004.3556.1	0.50	-1.2
3,447,181	+		Xcc-8004.3556.1	0.50	+0.3
3,447,181	+		Xcc-8004.3556.1	0.50	+0.5
3,447,425	+		Xcc-8004.3556.1	0.87	+0.4
3,447,425	+		Xcc-8004.3556.1	0.87	-0.1
3,447,425	+		Xcc-8004.3556.1	0.87	-1.2
3,447,426	-		Xcc-8004.3556.1	0.87	-0.2
3,447,426	-		Xcc-8004.3556.1	0.87	-0.4
3,447,464	+				+1.1
3,447,464	+				+0.3
3,447,465	-				+0.9
3,447,547	+				+1.1
3,447,573	+				+0.0
3,448,325	+				-1.6