Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3490.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,380,889	+		Xcc-8004.3489.1	0.64	-1.1
3,380,890	-		Xcc-8004.3489.1	0.64	-1.1
3,381,013	-		Xcc-8004.3489.1	0.68	+1.3
3,381,078	+		Xcc-8004.3489.1	0.71	+0.5
3,381,231	+		Xcc-8004.3489.1	0.77	-1.2
3,381,271	-		Xcc-8004.3489.1	0.78	+0.1
3,381,291	+		Xcc-8004.3489.1	0.79	+0.8
3,381,291	+		Xcc-8004.3489.1	0.79	-0.4
3,381,291	+		Xcc-8004.3489.1	0.79	-1.2
3,381,291	+		Xcc-8004.3489.1	0.79	+0.1
3,381,291	+		Xcc-8004.3489.1	0.79	+0.3
3,381,292	-		Xcc-8004.3489.1	0.79	+0.0
3,381,292	-		Xcc-8004.3489.1	0.79	+1.4
3,381,292	-		Xcc-8004.3489.1	0.79	+0.9
3,381,294	+		Xcc-8004.3489.1	0.79	-1.3
3,381,294	+		Xcc-8004.3489.1	0.79	+0.5
3,381,295	-		Xcc-8004.3489.1	0.79	-2.3
3,381,295	-		Xcc-8004.3489.1	0.79	+0.2
3,381,295	-		Xcc-8004.3489.1	0.79	-0.7
3,381,295	-		Xcc-8004.3489.1	0.79	+0.4
3,381,295	-		Xcc-8004.3489.1	0.79	-1.0
3,381,317	-		Xcc-8004.3489.1	0.80	-0.5
3,381,444	+		Xcc-8004.3489.1	0.85	-0.3
3,381,444	+		Xcc-8004.3489.1	0.85	+1.1
3,381,519	+		Xcc-8004.3489.1	0.88	-1.2
3,381,520	-		Xcc-8004.3489.1	0.88	-1.3
3,381,531	+		Xcc-8004.3489.1	0.88	+0.6
3,381,532	-		Xcc-8004.3489.1	0.88	+0.3
3,381,542	+		Xcc-8004.3489.1	0.89	-0.7
3,381,543	-		Xcc-8004.3489.1	0.89	-1.1
3,381,543	-		Xcc-8004.3489.1	0.89	-0.3
3,381,586	-				-1.0
3,381,652	-				-2.2
3,381,652	-				-0.3
3,381,725	-				-0.8
3,381,785	+				-0.1
3,381,786	-				-1.3
3,381,889	+				+0.7
3,381,889	+				+0.8
3,381,889	+				-0.2
3,381,890	-				-1.9
3,381,890	-				+0.9
3,381,890	-				+0.3
3,381,890	-				-2.1
3,381,890	-				+1.2
3,381,923	+				-0.9
3,381,923	+				-0.8
3,381,923	+				-0.0
3,381,923	+				+1.0
3,381,924	-				+0.5
3,381,924	-				-0.7
3,381,924	-				+1.4
3,381,924	-				+0.1
3,381,924	-				-0.0
3,381,924	-				-1.1
3,381,924	-				+0.2
3,381,927	+				+0.2
3,381,927	+				+0.9
3,381,927	+				+0.2
3,381,927	+				+0.7
3,381,927	+				-0.5
3,381,928	-				-0.2
3,381,928	-				+2.1
3,382,041	+		Xcc-8004.3490.1	0.16	-0.6
3,382,041	+		Xcc-8004.3490.1	0.16	-0.5
3,382,041	+		Xcc-8004.3490.1	0.16	-0.4
3,382,042	-		Xcc-8004.3490.1	0.16	-1.6
3,382,042	-		Xcc-8004.3490.1	0.16	+0.4
3,382,102	+		Xcc-8004.3490.1	0.21	-3.1
3,382,102	+		Xcc-8004.3490.1	0.21	+0.6
3,382,103	-		Xcc-8004.3490.1	0.21	-0.7
3,382,103	-		Xcc-8004.3490.1	0.21	-0.3
3,382,103	-		Xcc-8004.3490.1	0.21	+0.1
3,382,103	-		Xcc-8004.3490.1	0.21	+0.6
3,382,103	-		Xcc-8004.3490.1	0.21	+0.8
3,382,217	+		Xcc-8004.3490.1	0.31	+4.1
3,382,217	+		Xcc-8004.3490.1	0.31	+0.4
3,382,217	+		Xcc-8004.3490.1	0.31	-2.5
3,382,218	-		Xcc-8004.3490.1	0.31	-0.6
3,382,218	-		Xcc-8004.3490.1	0.31	-0.1
3,382,476	+		Xcc-8004.3490.1	0.53	+0.5
3,382,476	+		Xcc-8004.3490.1	0.53	+0.2
3,382,476	+		Xcc-8004.3490.1	0.53	-0.7
3,382,476	+		Xcc-8004.3490.1	0.53	-0.9
3,382,476	+		Xcc-8004.3490.1	0.53	-0.4
3,382,476	+		Xcc-8004.3490.1	0.53	-2.6
3,382,476	+		Xcc-8004.3490.1	0.53	-0.2
3,382,477	-		Xcc-8004.3490.1	0.53	+0.4
3,382,477	-		Xcc-8004.3490.1	0.53	+1.5
3,382,688	+		Xcc-8004.3490.1	0.71	+0.6
3,382,688	+		Xcc-8004.3490.1	0.71	+0.9
3,382,688	+		Xcc-8004.3490.1	0.71	-1.3
3,382,688	+		Xcc-8004.3490.1	0.71	-0.2
3,382,688	+		Xcc-8004.3490.1	0.71	-0.0
3,382,689	-		Xcc-8004.3490.1	0.72	-0.9
3,382,689	-		Xcc-8004.3490.1	0.72	-0.1
3,382,689	-		Xcc-8004.3490.1	0.72	-0.8
3,382,689	-		Xcc-8004.3490.1	0.72	-0.1
3,382,689	-		Xcc-8004.3490.1	0.72	+0.2
3,382,703	+		Xcc-8004.3490.1	0.73	+0.6
3,382,703	+		Xcc-8004.3490.1	0.73	-0.7
3,382,703	+		Xcc-8004.3490.1	0.73	+0.5
3,382,703	+		Xcc-8004.3490.1	0.73	-0.9
3,382,703	+		Xcc-8004.3490.1	0.73	-0.3
3,382,703	+		Xcc-8004.3490.1	0.73	-0.4
3,382,703	+		Xcc-8004.3490.1	0.73	-1.3
3,382,703	-		Xcc-8004.3490.1	0.73	-1.3
3,382,704	-		Xcc-8004.3490.1	0.73	+0.0
3,382,704	-		Xcc-8004.3490.1	0.73	+0.7
3,382,704	-		Xcc-8004.3490.1	0.73	+0.1
3,382,704	-		Xcc-8004.3490.1	0.73	-1.0
3,382,704	-		Xcc-8004.3490.1	0.73	+1.2
3,382,704	-		Xcc-8004.3490.1	0.73	-0.2
3,382,704	-		Xcc-8004.3490.1	0.73	+1.6
3,382,785	-		Xcc-8004.3490.1	0.80	-0.3
3,382,927	-				+0.1
3,383,048	+				-0.6
3,383,049	-				-0.1
3,383,049	-				+1.1
3,383,049	-				+0.8
3,383,049	-				+0.8
3,383,126	+				-0.0
3,383,126	+				-0.5
3,383,127	-				-0.4
3,383,163	-				-0.7
3,383,163	-				-0.2
3,383,197	+				+1.1
3,383,197	+				+0.8
3,383,197	+				-1.6
3,383,198	-				-0.9
3,383,198	-				-0.4
3,383,198	-				-0.9
3,383,198	-				-2.3
3,383,332	+		Xcc-8004.3491.1	0.18	+2.5
3,383,332	+		Xcc-8004.3491.1	0.18	+1.0
3,383,332	+		Xcc-8004.3491.1	0.18	-0.1
3,383,332	+		Xcc-8004.3491.1	0.18	-1.6
3,383,333	-		Xcc-8004.3491.1	0.18	+0.1
3,383,333	-		Xcc-8004.3491.1	0.18	+0.1
3,383,333	-		Xcc-8004.3491.1	0.18	+0.6
3,383,437	+		Xcc-8004.3491.1	0.31	+0.9
3,383,449	+		Xcc-8004.3491.1	0.33	+0.4
3,383,450	-		Xcc-8004.3491.1	0.33	+0.7
3,383,782	+		Xcc-8004.3491.1	0.75	-0.4
3,383,830	+		Xcc-8004.3491.1	0.82	-0.3
3,383,830	+		Xcc-8004.3491.1	0.82	-0.1
3,383,831	-		Xcc-8004.3491.1	0.82	+0.7
3,383,831	-		Xcc-8004.3491.1	0.82	-0.1
3,383,949	+				-0.6
3,383,949	+				+0.0
3,383,949	+				-0.5
3,383,949	+				-2.2
3,383,949	+				-1.3
3,383,950	-				-0.3
3,383,950	-				+0.7
3,383,950	-				-0.2
3,383,950	-				-1.2
3,383,950	-				-2.5
3,383,951	+				-1.4
3,383,951	+				+1.3
3,383,951	+				+0.8
3,383,951	+				-2.2
3,383,951	+				+0.3
3,383,951	+				-1.0
3,383,951	+				+1.0
3,383,951	+				+1.1
3,383,951	+				+1.5
3,383,951	+				+0.8
3,383,951	+				-0.2
3,383,951	+				-0.8
3,383,951	+				+0.7
3,383,951	+				-0.7
3,383,951	+				-1.1
3,383,951	+				-1.9
3,383,951	+				+1.1
3,383,951	+				+0.6
3,383,951	+				+1.8
3,383,951	+				-0.6
3,383,951	+				+0.5
3,383,951	+				+1.2
3,383,951	+				+0.7
3,383,951	+				+0.9
3,383,951	+				+0.1
3,383,952	-				-0.4
3,383,952	-				+1.5
3,383,952	-				-0.8
3,383,952	-				-2.0
3,383,952	-				+1.5
3,383,952	-				+0.3
3,383,952	-				-1.0
3,383,952	-				+0.5
3,383,952	-				+0.2
3,383,952	-				-0.2
3,383,952	-				-0.3
3,383,952	-				+0.4
3,383,952	-				-1.2
3,383,952	-				+0.5
3,383,952	-				+0.7
3,383,952	-				+0.3
3,383,952	-				-1.0
3,383,952	-				+0.6
3,383,952	-				-0.1
3,383,952	-				-1.2
3,383,952	-				-0.9
3,383,952	-				-0.3
3,383,952	-				+0.3
3,383,952	-				-0.1
3,383,952	-				-1.0
3,383,952	-				-0.8
3,383,952	-				+0.1
3,383,952	-				+3.1
3,383,952	-				+0.5
3,383,952	-				-0.4
3,383,952	-				-2.5
3,383,960	+				+0.4
3,383,960	+				-1.8
3,383,960	+				-0.4
3,383,960	+				+0.2
3,383,960	+				+1.5
3,383,961	-				-1.6
3,383,961	-				-2.1
3,383,961	-				+0.0