Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3486.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,375,622	+				+0.4
3,375,622	+				-0.8
3,375,622	+				-0.3
3,375,622	+				-0.5
3,375,622	+				-0.2
3,375,622	+				+1.3
3,375,622	+				-0.3
3,375,622	+				-0.8
3,375,622	+				+0.8
3,375,622	+				+0.8
3,375,622	+				-0.6
3,375,622	+				+0.2
3,375,623	-				+0.3
3,375,623	-				+1.2
3,375,623	-				+1.6
3,375,623	-				-0.1
3,375,623	-				-0.4
3,375,623	-				-1.9
3,375,623	-				-0.2
3,375,623	-				-0.4
3,375,623	-				-0.8
3,375,623	-				+0.2
3,375,623	-				-1.4
3,375,664	-				-0.1
3,375,674	+				+0.4
3,375,674	+				+0.8
3,375,674	+				-0.2
3,375,674	+				-2.6
3,375,674	+				+0.7
3,375,675	-				+1.6
3,375,693	+				+0.0
3,375,694	-				-0.5
3,375,694	-				-0.8
3,375,737	-				-2.2
3,375,881	+		Xcc-8004.3486.1	0.20	+0.3
3,375,881	+		Xcc-8004.3486.1	0.20	+0.2
3,375,881	+		Xcc-8004.3486.1	0.20	+0.6
3,375,881	+		Xcc-8004.3486.1	0.20	+0.1
3,375,881	+		Xcc-8004.3486.1	0.20	+0.2
3,375,882	-		Xcc-8004.3486.1	0.20	+0.6
3,375,882	-		Xcc-8004.3486.1	0.20	+0.3
3,375,882	-		Xcc-8004.3486.1	0.20	-0.4
3,375,882	-		Xcc-8004.3486.1	0.20	-0.1
3,375,882	-		Xcc-8004.3486.1	0.20	-0.2
3,375,890	+		Xcc-8004.3486.1	0.22	-0.4
3,375,890	+		Xcc-8004.3486.1	0.22	-0.5
3,375,890	+		Xcc-8004.3486.1	0.22	-0.6
3,375,890	+		Xcc-8004.3486.1	0.22	-0.9
3,375,890	+		Xcc-8004.3486.1	0.22	-0.4
3,375,891	-		Xcc-8004.3486.1	0.22	-1.0
3,375,891	-		Xcc-8004.3486.1	0.22	+0.1
3,375,891	-		Xcc-8004.3486.1	0.22	-0.1
3,375,891	-		Xcc-8004.3486.1	0.22	-0.7
3,375,891	-		Xcc-8004.3486.1	0.22	-0.1
3,375,891	-		Xcc-8004.3486.1	0.22	+0.4
3,375,891	-		Xcc-8004.3486.1	0.22	-0.0
3,375,926	+		Xcc-8004.3486.1	0.28	-1.3
3,375,927	-		Xcc-8004.3486.1	0.28	+0.2
3,375,927	-		Xcc-8004.3486.1	0.28	-0.5
3,375,927	-		Xcc-8004.3486.1	0.28	-0.6
3,375,943	+		Xcc-8004.3486.1	0.31	+0.4
3,375,943	+		Xcc-8004.3486.1	0.31	+0.1
3,375,943	+		Xcc-8004.3486.1	0.31	-0.2
3,375,943	+		Xcc-8004.3486.1	0.31	+0.0
3,375,943	+		Xcc-8004.3486.1	0.31	+0.3
3,375,943	+		Xcc-8004.3486.1	0.31	+0.4
3,375,943	+		Xcc-8004.3486.1	0.31	-0.4
3,375,943	+		Xcc-8004.3486.1	0.31	+1.1
3,375,943	+		Xcc-8004.3486.1	0.31	-0.4
3,375,944	-		Xcc-8004.3486.1	0.32	-0.5
3,375,944	-		Xcc-8004.3486.1	0.32	-0.2
3,375,944	-		Xcc-8004.3486.1	0.32	-0.1
3,375,944	-		Xcc-8004.3486.1	0.32	-0.0
3,375,944	-		Xcc-8004.3486.1	0.32	-0.1
3,375,944	-		Xcc-8004.3486.1	0.32	+0.2
3,375,944	-		Xcc-8004.3486.1	0.32	+0.7
3,375,944	-		Xcc-8004.3486.1	0.32	+0.9
3,376,031	+		Xcc-8004.3486.1	0.47	-1.0
3,376,031	+		Xcc-8004.3486.1	0.47	+0.3
3,376,031	+		Xcc-8004.3486.1	0.47	+1.3
3,376,088	+		Xcc-8004.3486.1	0.57	+0.0
3,376,089	-		Xcc-8004.3486.1	0.58	+0.0
3,376,126	+		Xcc-8004.3486.1	0.64	-0.2
3,376,126	+		Xcc-8004.3486.1	0.64	+0.6
3,376,127	-		Xcc-8004.3486.1	0.65	-0.2
3,376,127	-		Xcc-8004.3486.1	0.65	-1.4
3,376,161	-		Xcc-8004.3486.1	0.71	+0.4
3,376,184	+		Xcc-8004.3486.1	0.75	-0.2
3,376,184	+		Xcc-8004.3486.1	0.75	-0.7
3,376,184	+		Xcc-8004.3486.1	0.75	+0.6
3,376,184	+		Xcc-8004.3486.1	0.75	-1.0
3,376,185	-		Xcc-8004.3486.1	0.75	+0.1
3,376,271	+				+0.2
3,376,271	+				-0.2
3,376,271	+				+0.2
3,376,271	+				+0.2
3,376,271	+				-0.7
3,376,272	-				-2.2
3,376,272	-				-2.3
3,376,272	-				-0.1
3,376,272	-				-0.7
3,376,272	-				+0.3
3,376,313	+				+0.0
3,376,313	+				-0.4
3,376,313	+				+0.6
3,376,313	+				-0.1
3,376,313	+				+0.1
3,376,314	-				+0.5
3,376,314	-				-0.5
3,376,314	-				+0.2
3,376,314	-				-0.8
3,376,314	-				+0.8
3,376,314	-				+1.5
3,376,357	+				-0.4
3,376,357	+				+0.1
3,376,357	+				-1.3
3,376,357	+				+0.3
3,376,357	+				+0.9
3,376,357	+				+0.6
3,376,358	-				+2.2
3,376,358	-				-0.3
3,376,651	+		Xcc-8004.3487.1	0.13	+1.3
3,376,651	+		Xcc-8004.3487.1	0.13	-1.3
3,376,652	-		Xcc-8004.3487.1	0.13	-0.3
3,376,699	+		Xcc-8004.3487.1	0.15	+1.1
3,376,699	+		Xcc-8004.3487.1	0.15	+0.3
3,376,700	-		Xcc-8004.3487.1	0.16	-0.6
3,376,700	-		Xcc-8004.3487.1	0.16	+0.3
3,376,700	-		Xcc-8004.3487.1	0.16	+0.3
3,376,700	-		Xcc-8004.3487.1	0.16	-0.4
3,376,700	-		Xcc-8004.3487.1	0.16	+0.2
3,376,700	-		Xcc-8004.3487.1	0.16	-0.7
3,376,700	-		Xcc-8004.3487.1	0.16	-0.0
3,376,700	-		Xcc-8004.3487.1	0.16	-0.7
3,376,700	-		Xcc-8004.3487.1	0.16	-1.0
3,376,700	-		Xcc-8004.3487.1	0.16	-2.0
3,376,700	-		Xcc-8004.3487.1	0.16	+1.0
3,376,720	+		Xcc-8004.3487.1	0.17	-0.2
3,376,846	+		Xcc-8004.3487.1	0.23	-1.3
3,376,846	+		Xcc-8004.3487.1	0.23	+0.9
3,376,847	-		Xcc-8004.3487.1	0.23	+0.6
3,376,847	-		Xcc-8004.3487.1	0.23	+2.1
3,376,990	+		Xcc-8004.3487.1	0.30	-0.8
3,376,990	+		Xcc-8004.3487.1	0.30	-0.9
3,376,990	+		Xcc-8004.3487.1	0.30	+0.8
3,376,990	+		Xcc-8004.3487.1	0.30	-0.8
3,376,991	-		Xcc-8004.3487.1	0.31	-1.1
3,376,991	-		Xcc-8004.3487.1	0.31	-1.4
3,376,991	-		Xcc-8004.3487.1	0.31	-0.5
3,377,132	+		Xcc-8004.3487.1	0.38	+2.1
3,377,132	+		Xcc-8004.3487.1	0.38	+1.3
3,377,133	-		Xcc-8004.3487.1	0.38	+0.8
3,377,133	-		Xcc-8004.3487.1	0.38	+0.7
3,377,149	+		Xcc-8004.3487.1	0.39	+0.1