Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3484.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3483.1 and Xcc-8004.3484.1 are separated by 133 nucleotidesXcc-8004.3484.1 and Xcc-8004.3485.1 are separated by 146 nucleotides Xcc-8004.3483.1: Xcc-8004.3483.1 - Outer membrane protein A precursor, at 3,371,582 to 3,372,307 Xcc-8004.3483.1 Xcc-8004.3484.1: Xcc-8004.3484.1 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 3,372,441 to 3,374,003 Xcc-8004.3484.1 Xcc-8004.3485.1: Xcc-8004.3485.1 - Replicative DNA helicase (EC 3.6.1.-), at 3,374,150 to 3,375,580 Xcc-8004.3485.1 Position (kb) 3372 3373 3374 3375Strain fitness (log2 ratio) -2 -1 0 1 2at 3371.461 kb on - strandat 3371.486 kb on - strandat 3371.501 kb on + strandat 3371.502 kb on - strandat 3371.502 kb on - strandat 3371.502 kb on - strandat 3371.502 kb on - strandat 3371.558 kb on - strandat 3371.558 kb on - strandat 3371.558 kb on - strandat 3371.596 kb on + strandat 3371.621 kb on + strandat 3371.819 kb on - strand, within Xcc-8004.3483.1at 3371.825 kb on - strand, within Xcc-8004.3483.1at 3371.856 kb on + strand, within Xcc-8004.3483.1at 3371.856 kb on + strand, within Xcc-8004.3483.1at 3371.857 kb on - strand, within Xcc-8004.3483.1at 3371.857 kb on - strand, within Xcc-8004.3483.1at 3371.857 kb on - strand, within Xcc-8004.3483.1at 3371.895 kb on + strand, within Xcc-8004.3483.1at 3371.896 kb on - strand, within Xcc-8004.3483.1at 3371.896 kb on - strand, within Xcc-8004.3483.1at 3371.896 kb on - strand, within Xcc-8004.3483.1at 3372.039 kb on + strand, within Xcc-8004.3483.1at 3372.040 kb on - strand, within Xcc-8004.3483.1at 3372.155 kb on - strand, within Xcc-8004.3483.1at 3372.207 kb on + strand, within Xcc-8004.3483.1at 3372.225 kb on + strand, within Xcc-8004.3483.1at 3372.225 kb on + strand, within Xcc-8004.3483.1at 3372.225 kb on + strand, within Xcc-8004.3483.1at 3372.225 kb on + strand, within Xcc-8004.3483.1at 3372.226 kb on - strand, within Xcc-8004.3483.1at 3372.226 kb on - strand, within Xcc-8004.3483.1at 3372.226 kb on - strand, within Xcc-8004.3483.1at 3372.460 kb on + strandat 3372.461 kb on - strandat 3372.461 kb on - strandat 3372.461 kb on - strandat 3372.518 kb on - strandat 3372.518 kb on - strandat 3372.518 kb on - strandat 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.617 kb on - strand, within Xcc-8004.3484.1at 3372.617 kb on - strand, within Xcc-8004.3484.1at 3372.617 kb on - strand, within Xcc-8004.3484.1at 3372.617 kb on - strand, within Xcc-8004.3484.1at 3372.674 kb on - strand, within Xcc-8004.3484.1at 3373.043 kb on + strand, within Xcc-8004.3484.1at 3373.043 kb on + strand, within Xcc-8004.3484.1at 3373.044 kb on - strand, within Xcc-8004.3484.1at 3373.044 kb on - strand, within Xcc-8004.3484.1at 3373.044 kb on - strand, within Xcc-8004.3484.1at 3373.045 kb on + strand, within Xcc-8004.3484.1at 3373.046 kb on - strand, within Xcc-8004.3484.1at 3373.415 kb on + strand, within Xcc-8004.3484.1at 3373.415 kb on + strand, within Xcc-8004.3484.1at 3373.416 kb on - strand, within Xcc-8004.3484.1at 3373.426 kb on + strand, within Xcc-8004.3484.1at 3373.426 kb on + strand, within Xcc-8004.3484.1at 3373.427 kb on - strand, within Xcc-8004.3484.1at 3373.427 kb on - strand, within Xcc-8004.3484.1at 3373.427 kb on - strand, within Xcc-8004.3484.1at 3373.427 kb on - strand, within Xcc-8004.3484.1at 3373.427 kb on - strand, within Xcc-8004.3484.1at 3373.467 kb on + strand, within Xcc-8004.3484.1at 3373.559 kb on - strand, within Xcc-8004.3484.1at 3373.573 kb on + strand, within Xcc-8004.3484.1at 3373.574 kb on - strand, within Xcc-8004.3484.1at 3373.574 kb on - strand, within Xcc-8004.3484.1at 3373.759 kb on + strand, within Xcc-8004.3484.1at 3373.759 kb on + strand, within Xcc-8004.3484.1at 3373.759 kb on + strand, within Xcc-8004.3484.1at 3373.759 kb on + strand, within Xcc-8004.3484.1at 3373.759 kb on + strand, within Xcc-8004.3484.1at 3373.760 kb on - strand, within Xcc-8004.3484.1at 3373.852 kb on + strandat 3373.853 kb on - strandat 3373.853 kb on - strandat 3373.895 kb on + strandat 3373.895 kb on + strandat 3373.896 kb on - strandat 3373.896 kb on - strandat 3373.896 kb on - strandat 3374.008 kb on + strandat 3374.018 kb on - strandat 3374.018 kb on - strandat 3374.151 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
3,371,461 - +1.3
3,371,486 - +1.5
3,371,501 + -1.3
3,371,502 - -0.3
3,371,502 - +0.2
3,371,502 - -0.6
3,371,502 - -0.8
3,371,558 - -0.8
3,371,558 - +0.1
3,371,558 - -0.5
3,371,596 + -0.6
3,371,621 + -0.0
3,371,819 - Xcc-8004.3483.1 0.33 -0.7
3,371,825 - Xcc-8004.3483.1 0.33 +0.3
3,371,856 + Xcc-8004.3483.1 0.38 -0.3
3,371,856 + Xcc-8004.3483.1 0.38 +0.9
3,371,857 - Xcc-8004.3483.1 0.38 +0.3
3,371,857 - Xcc-8004.3483.1 0.38 +0.8
3,371,857 - Xcc-8004.3483.1 0.38 -1.7
3,371,895 + Xcc-8004.3483.1 0.43 -1.0
3,371,896 - Xcc-8004.3483.1 0.43 +0.2
3,371,896 - Xcc-8004.3483.1 0.43 +0.0
3,371,896 - Xcc-8004.3483.1 0.43 -1.0
3,372,039 + Xcc-8004.3483.1 0.63 -1.0
3,372,040 - Xcc-8004.3483.1 0.63 -0.2
3,372,155 - Xcc-8004.3483.1 0.79 -1.6
3,372,207 + Xcc-8004.3483.1 0.86 +0.0
3,372,225 + Xcc-8004.3483.1 0.89 -0.5
3,372,225 + Xcc-8004.3483.1 0.89 -1.5
3,372,225 + Xcc-8004.3483.1 0.89 -0.2
3,372,225 + Xcc-8004.3483.1 0.89 +0.3
3,372,226 - Xcc-8004.3483.1 0.89 -1.1
3,372,226 - Xcc-8004.3483.1 0.89 -0.1
3,372,226 - Xcc-8004.3483.1 0.89 -0.8
3,372,460 + +0.1
3,372,461 - +0.5
3,372,461 - -0.7
3,372,461 - -0.3
3,372,518 - -0.3
3,372,518 - +2.0
3,372,518 - -0.1
3,372,616 + Xcc-8004.3484.1 0.11 -0.0
3,372,616 + Xcc-8004.3484.1 0.11 -0.0
3,372,616 + Xcc-8004.3484.1 0.11 -0.0
3,372,616 + Xcc-8004.3484.1 0.11 +1.7
3,372,616 + Xcc-8004.3484.1 0.11 +0.6
3,372,616 + Xcc-8004.3484.1 0.11 +0.9
3,372,616 + Xcc-8004.3484.1 0.11 +0.3
3,372,616 + Xcc-8004.3484.1 0.11 +1.0
3,372,616 + Xcc-8004.3484.1 0.11 -1.5
3,372,616 + Xcc-8004.3484.1 0.11 +0.0
3,372,616 + Xcc-8004.3484.1 0.11 -0.7
3,372,616 + Xcc-8004.3484.1 0.11 -0.4
3,372,617 - Xcc-8004.3484.1 0.11 +0.7
3,372,617 - Xcc-8004.3484.1 0.11 +1.3
3,372,617 - Xcc-8004.3484.1 0.11 -0.0
3,372,617 - Xcc-8004.3484.1 0.11 +0.9
3,372,674 - Xcc-8004.3484.1 0.15 -0.1
3,373,043 + Xcc-8004.3484.1 0.39 -0.3
3,373,043 + Xcc-8004.3484.1 0.39 -0.3
3,373,044 - Xcc-8004.3484.1 0.39 +0.6
3,373,044 - Xcc-8004.3484.1 0.39 +1.4
3,373,044 - Xcc-8004.3484.1 0.39 +0.8
3,373,045 + Xcc-8004.3484.1 0.39 +1.1
3,373,046 - Xcc-8004.3484.1 0.39 -1.0
3,373,415 + Xcc-8004.3484.1 0.62 -0.8
3,373,415 + Xcc-8004.3484.1 0.62 -0.7
3,373,416 - Xcc-8004.3484.1 0.62 +0.1
3,373,426 + Xcc-8004.3484.1 0.63 -0.9
3,373,426 + Xcc-8004.3484.1 0.63 +1.3
3,373,427 - Xcc-8004.3484.1 0.63 +1.5
3,373,427 - Xcc-8004.3484.1 0.63 +0.1
3,373,427 - Xcc-8004.3484.1 0.63 -2.0
3,373,427 - Xcc-8004.3484.1 0.63 -0.1
3,373,427 - Xcc-8004.3484.1 0.63 +0.6
3,373,467 + Xcc-8004.3484.1 0.66 -1.8
3,373,559 - Xcc-8004.3484.1 0.72 -0.3
3,373,573 + Xcc-8004.3484.1 0.72 +2.1
3,373,574 - Xcc-8004.3484.1 0.72 -0.3
3,373,574 - Xcc-8004.3484.1 0.72 -0.5
3,373,759 + Xcc-8004.3484.1 0.84 +0.1
3,373,759 + Xcc-8004.3484.1 0.84 +0.3
3,373,759 + Xcc-8004.3484.1 0.84 -0.1
3,373,759 + Xcc-8004.3484.1 0.84 -0.1
3,373,759 + Xcc-8004.3484.1 0.84 -0.9
3,373,760 - Xcc-8004.3484.1 0.84 +0.6
3,373,852 + +0.1
3,373,853 - -0.3
3,373,853 - -1.6
3,373,895 + +0.1
3,373,895 + -0.7
3,373,896 - +0.4
3,373,896 - -1.5
3,373,896 - +0.4
3,374,008 + +0.6
3,374,018 - +0.4
3,374,018 - -1.5
3,374,151 + -1.1

Or see this region's nucleotide sequence