Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3429.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,321,491	-				+0.1
3,321,491	-				-0.2
3,321,491	-				-0.9
3,321,491	-				-1.0
3,321,491	-				+0.2
3,321,491	-				-1.5
3,321,491	-				-0.1
3,321,558	+				+0.6
3,321,558	+				-0.0
3,321,558	+				-1.1
3,321,559	-				+0.4
3,322,174	-				+4.1
3,322,174	-				-0.6
3,322,174	-				-0.5
3,322,174	-				+1.2
3,322,174	-				-0.2
3,322,174	-				-0.3
3,322,174	-				+1.1
3,322,304	+				-0.3
3,322,304	+				+1.2
3,322,304	+				-0.0
3,322,305	-				-1.4
3,322,305	-				-0.8
3,322,305	-				-0.1
3,322,305	-				-2.4
3,322,305	-				-0.5
3,322,305	-				+0.6
3,322,363	-		Xcc-8004.3430.1	0.13	-0.3
3,322,364	+		Xcc-8004.3430.1	0.13	+2.1
3,322,365	-		Xcc-8004.3430.1	0.13	-1.1
3,322,365	-		Xcc-8004.3430.1	0.13	-0.1
3,322,404	+		Xcc-8004.3430.1	0.17	+0.8
3,322,405	-		Xcc-8004.3430.1	0.17	-0.4
3,322,724	+		Xcc-8004.3430.1	0.47	+0.5
3,322,724	+		Xcc-8004.3430.1	0.47	-0.3
3,322,724	+		Xcc-8004.3430.1	0.47	+3.2
3,322,725	-		Xcc-8004.3430.1	0.47	+0.6
3,322,725	-		Xcc-8004.3430.1	0.47	+0.2
3,322,725	-		Xcc-8004.3430.1	0.47	+0.0
3,322,725	-		Xcc-8004.3430.1	0.47	-0.5
3,322,725	-		Xcc-8004.3430.1	0.47	+0.4
3,322,757	+		Xcc-8004.3430.1	0.50	+0.7
3,322,758	-		Xcc-8004.3430.1	0.50	+1.1
3,322,758	-		Xcc-8004.3430.1	0.50	-1.2
3,322,758	-		Xcc-8004.3430.1	0.50	+1.5
3,322,807	+		Xcc-8004.3430.1	0.55	-0.8
3,322,807	+		Xcc-8004.3430.1	0.55	-0.1
3,322,808	-		Xcc-8004.3430.1	0.55	-1.9
3,322,808	-		Xcc-8004.3430.1	0.55	-1.3
3,322,808	-		Xcc-8004.3430.1	0.55	+0.9
3,322,808	-		Xcc-8004.3430.1	0.55	-0.4
3,322,852	+		Xcc-8004.3430.1	0.59	-0.0
3,322,854	+		Xcc-8004.3430.1	0.59	-0.1