Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3428.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,318,667	+		Xcc-8004.3426.1	0.35	-0.0
3,318,667	+		Xcc-8004.3426.1	0.35	-0.6
3,318,667	+		Xcc-8004.3426.1	0.35	+0.1
3,318,667	+		Xcc-8004.3426.1	0.35	-0.3
3,318,667	+		Xcc-8004.3426.1	0.35	+0.5
3,318,667	+		Xcc-8004.3426.1	0.35	+0.1
3,318,667	+		Xcc-8004.3426.1	0.35	-0.7
3,318,667	+		Xcc-8004.3426.1	0.35	+0.5
3,318,668	-		Xcc-8004.3426.1	0.35	+0.4
3,318,668	-		Xcc-8004.3426.1	0.35	+3.1
3,318,668	-		Xcc-8004.3426.1	0.35	-1.3
3,318,668	-		Xcc-8004.3426.1	0.35	+2.1
3,318,668	-		Xcc-8004.3426.1	0.35	-0.1
3,318,768	+		Xcc-8004.3426.1	0.44	+1.1
3,318,768	+		Xcc-8004.3426.1	0.44	+0.8
3,318,768	+		Xcc-8004.3426.1	0.44	+1.5
3,318,768	+		Xcc-8004.3426.1	0.44	-0.6
3,318,768	+		Xcc-8004.3426.1	0.44	+0.0
3,318,768	+		Xcc-8004.3426.1	0.44	-1.0
3,318,769	-		Xcc-8004.3426.1	0.44	-1.7
3,318,769	-		Xcc-8004.3426.1	0.44	-0.1
3,319,042	+		Xcc-8004.3426.1	0.68	+0.3
3,319,043	-		Xcc-8004.3426.1	0.68	+3.1
3,319,124	+		Xcc-8004.3426.1	0.76	-0.5
3,319,124	+		Xcc-8004.3426.1	0.76	+0.1
3,319,125	-		Xcc-8004.3426.1	0.76	-0.1
3,319,240	+		Xcc-8004.3426.1	0.86	-0.1
3,319,241	-		Xcc-8004.3426.1	0.86	+1.7
3,319,306	+				-0.7
3,319,306	+				-0.1
3,319,306	+				-1.3
3,319,307	-				-2.1
3,319,307	-				-0.4
3,319,307	-				+0.7
3,319,307	-				+0.5
3,319,307	-				+3.1
3,319,307	-				-1.4
3,319,307	-				+0.7
3,319,307	-				-0.8
3,319,381	+				-0.1
3,319,382	-				-0.4
3,319,382	-				-0.4
3,319,382	-				-0.4
3,319,443	+				-0.4
3,319,443	+				-0.1
3,319,444	-				+2.5
3,319,500	+				+0.9
3,319,500	+				+1.1
3,319,500	+				-0.1
3,319,501	-				-0.3
3,319,522	+				-0.1
3,319,523	-				-1.7
3,319,523	-				+0.0
3,319,529	+				-1.8
3,319,530	-				+0.9
3,319,551	-				-1.4
3,319,551	-				-0.2
3,319,551	-				-0.5
3,321,491	-				+0.1
3,321,491	-				-0.2
3,321,491	-				-0.9
3,321,491	-				-1.0
3,321,491	-				+0.2
3,321,491	-				-1.5
3,321,491	-				-0.1
3,321,558	+				+0.6
3,321,558	+				-0.0
3,321,558	+				-1.1
3,321,559	-				+0.4
3,322,174	-				+4.1
3,322,174	-				-0.6
3,322,174	-				-0.5
3,322,174	-				+1.2
3,322,174	-				-0.2
3,322,174	-				-0.3
3,322,174	-				+1.1
3,322,304	+				-0.3
3,322,304	+				+1.2
3,322,304	+				-0.0
3,322,305	-				-1.4
3,322,305	-				-0.8
3,322,305	-				-0.1
3,322,305	-				-2.4
3,322,305	-				-0.5
3,322,305	-				+0.6
3,322,363	-		Xcc-8004.3430.1	0.13	-0.3
3,322,364	+		Xcc-8004.3430.1	0.13	+2.1
3,322,365	-		Xcc-8004.3430.1	0.13	-1.1
3,322,365	-		Xcc-8004.3430.1	0.13	-0.1
3,322,404	+		Xcc-8004.3430.1	0.17	+0.8
3,322,405	-		Xcc-8004.3430.1	0.17	-0.4