Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3426.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3425.1 and Xcc-8004.3426.1 are separated by 374 nucleotidesXcc-8004.3426.1 and Xcc-8004.3428.1 are separated by 138 nucleotides Xcc-8004.3425.1: Xcc-8004.3425.1 - Pyridoxal kinase (EC 2.7.1.35), at 3,316,987 to 3,317,895 Xcc-8004.3425.1 Xcc-8004.3426.1: Xcc-8004.3426.1 - Chaperone protein DnaJ, at 3,318,270 to 3,319,400 Xcc-8004.3426.1 Xcc-8004.3428.1: Xcc-8004.3428.1 - Chaperone protein DnaK, at 3,319,539 to 3,321,467 Xcc-8004.3428.1 Position (kb) 3318 3319 3320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.289 kb on + strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.290 kb on - strand, within Xcc-8004.3425.1at 3317.468 kb on + strand, within Xcc-8004.3425.1at 3317.469 kb on - strand, within Xcc-8004.3425.1at 3317.469 kb on - strand, within Xcc-8004.3425.1at 3317.510 kb on + strand, within Xcc-8004.3425.1at 3317.511 kb on - strand, within Xcc-8004.3425.1at 3317.511 kb on - strand, within Xcc-8004.3425.1at 3317.511 kb on - strand, within Xcc-8004.3425.1at 3317.588 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.647 kb on + strand, within Xcc-8004.3425.1at 3317.648 kb on - strand, within Xcc-8004.3425.1at 3317.648 kb on - strand, within Xcc-8004.3425.1at 3317.648 kb on - strand, within Xcc-8004.3425.1at 3317.648 kb on - strand, within Xcc-8004.3425.1at 3317.648 kb on - strand, within Xcc-8004.3425.1at 3317.648 kb on - strand, within Xcc-8004.3425.1at 3317.648 kb on - strand, within Xcc-8004.3425.1at 3317.648 kb on - strand, within Xcc-8004.3425.1at 3317.696 kb on + strand, within Xcc-8004.3425.1at 3317.696 kb on + strand, within Xcc-8004.3425.1at 3317.696 kb on + strand, within Xcc-8004.3425.1at 3317.696 kb on + strand, within Xcc-8004.3425.1at 3317.696 kb on + strand, within Xcc-8004.3425.1at 3317.697 kb on - strand, within Xcc-8004.3425.1at 3317.697 kb on - strand, within Xcc-8004.3425.1at 3317.697 kb on - strand, within Xcc-8004.3425.1at 3317.721 kb on + strand, within Xcc-8004.3425.1at 3317.721 kb on + strand, within Xcc-8004.3425.1at 3317.722 kb on - strand, within Xcc-8004.3425.1at 3317.722 kb on - strand, within Xcc-8004.3425.1at 3317.722 kb on - strand, within Xcc-8004.3425.1at 3317.722 kb on - strand, within Xcc-8004.3425.1at 3317.722 kb on - strand, within Xcc-8004.3425.1at 3317.728 kb on + strand, within Xcc-8004.3425.1at 3317.729 kb on - strand, within Xcc-8004.3425.1at 3317.743 kb on + strand, within Xcc-8004.3425.1at 3317.744 kb on - strand, within Xcc-8004.3425.1at 3317.744 kb on - strand, within Xcc-8004.3425.1at 3317.795 kb on + strand, within Xcc-8004.3425.1at 3317.795 kb on + strand, within Xcc-8004.3425.1at 3318.012 kb on - strandat 3318.012 kb on - strandat 3318.012 kb on - strandat 3318.012 kb on - strandat 3318.012 kb on - strandat 3318.012 kb on - strandat 3318.012 kb on - strandat 3318.021 kb on - strandat 3318.021 kb on - strandat 3318.021 kb on - strandat 3318.021 kb on - strandat 3318.086 kb on - strandat 3318.086 kb on - strandat 3318.086 kb on - strandat 3318.086 kb on - strandat 3318.134 kb on + strandat 3318.154 kb on + strandat 3318.154 kb on + strandat 3318.154 kb on + strandat 3318.154 kb on + strandat 3318.154 kb on + strandat 3318.158 kb on + strandat 3318.158 kb on + strandat 3318.158 kb on + strandat 3318.158 kb on + strandat 3318.158 kb on + strandat 3318.436 kb on + strand, within Xcc-8004.3426.1at 3318.436 kb on + strand, within Xcc-8004.3426.1at 3318.667 kb on + strand, within Xcc-8004.3426.1at 3318.667 kb on + strand, within Xcc-8004.3426.1at 3318.667 kb on + strand, within Xcc-8004.3426.1at 3318.667 kb on + strand, within Xcc-8004.3426.1at 3318.667 kb on + strand, within Xcc-8004.3426.1at 3318.667 kb on + strand, within Xcc-8004.3426.1at 3318.667 kb on + strand, within Xcc-8004.3426.1at 3318.667 kb on + strand, within Xcc-8004.3426.1at 3318.668 kb on - strand, within Xcc-8004.3426.1at 3318.668 kb on - strand, within Xcc-8004.3426.1at 3318.668 kb on - strand, within Xcc-8004.3426.1at 3318.668 kb on - strand, within Xcc-8004.3426.1at 3318.668 kb on - strand, within Xcc-8004.3426.1at 3318.768 kb on + strand, within Xcc-8004.3426.1at 3318.768 kb on + strand, within Xcc-8004.3426.1at 3318.768 kb on + strand, within Xcc-8004.3426.1at 3318.768 kb on + strand, within Xcc-8004.3426.1at 3318.768 kb on + strand, within Xcc-8004.3426.1at 3318.768 kb on + strand, within Xcc-8004.3426.1at 3318.769 kb on - strand, within Xcc-8004.3426.1at 3318.769 kb on - strand, within Xcc-8004.3426.1at 3319.042 kb on + strand, within Xcc-8004.3426.1at 3319.043 kb on - strand, within Xcc-8004.3426.1at 3319.124 kb on + strand, within Xcc-8004.3426.1at 3319.124 kb on + strand, within Xcc-8004.3426.1at 3319.125 kb on - strand, within Xcc-8004.3426.1at 3319.240 kb on + strand, within Xcc-8004.3426.1at 3319.241 kb on - strand, within Xcc-8004.3426.1at 3319.306 kb on + strandat 3319.306 kb on + strandat 3319.306 kb on + strandat 3319.307 kb on - strandat 3319.307 kb on - strandat 3319.307 kb on - strandat 3319.307 kb on - strandat 3319.307 kb on - strandat 3319.307 kb on - strandat 3319.307 kb on - strandat 3319.307 kb on - strandat 3319.381 kb on + strandat 3319.382 kb on - strandat 3319.382 kb on - strandat 3319.382 kb on - strandat 3319.443 kb on + strandat 3319.443 kb on + strandat 3319.444 kb on - strandat 3319.500 kb on + strandat 3319.500 kb on + strandat 3319.500 kb on + strandat 3319.501 kb on - strandat 3319.522 kb on + strandat 3319.523 kb on - strandat 3319.523 kb on - strandat 3319.529 kb on + strandat 3319.530 kb on - strandat 3319.551 kb on - strandat 3319.551 kb on - strandat 3319.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,317,289 + Xcc-8004.3425.1 0.33 -2.1
3,317,289 + Xcc-8004.3425.1 0.33 -0.3
3,317,289 + Xcc-8004.3425.1 0.33 -0.1
3,317,289 + Xcc-8004.3425.1 0.33 -0.5
3,317,289 + Xcc-8004.3425.1 0.33 -1.4
3,317,289 + Xcc-8004.3425.1 0.33 -0.1
3,317,289 + Xcc-8004.3425.1 0.33 -0.8
3,317,289 + Xcc-8004.3425.1 0.33 +1.7
3,317,289 + Xcc-8004.3425.1 0.33 -0.5
3,317,289 + Xcc-8004.3425.1 0.33 +1.0
3,317,289 + Xcc-8004.3425.1 0.33 +0.5
3,317,289 + Xcc-8004.3425.1 0.33 -0.4
3,317,289 + Xcc-8004.3425.1 0.33 +0.5
3,317,289 + Xcc-8004.3425.1 0.33 -0.4
3,317,289 + Xcc-8004.3425.1 0.33 -0.0
3,317,290 - Xcc-8004.3425.1 0.33 -0.2
3,317,290 - Xcc-8004.3425.1 0.33 +0.3
3,317,290 - Xcc-8004.3425.1 0.33 +1.0
3,317,290 - Xcc-8004.3425.1 0.33 -2.5
3,317,290 - Xcc-8004.3425.1 0.33 -1.0
3,317,290 - Xcc-8004.3425.1 0.33 +0.7
3,317,290 - Xcc-8004.3425.1 0.33 -0.2
3,317,290 - Xcc-8004.3425.1 0.33 +0.8
3,317,290 - Xcc-8004.3425.1 0.33 -0.2
3,317,290 - Xcc-8004.3425.1 0.33 +2.1
3,317,290 - Xcc-8004.3425.1 0.33 -0.2
3,317,290 - Xcc-8004.3425.1 0.33 +0.1
3,317,468 + Xcc-8004.3425.1 0.53 +3.1
3,317,469 - Xcc-8004.3425.1 0.53 +0.4
3,317,469 - Xcc-8004.3425.1 0.53 -1.0
3,317,510 + Xcc-8004.3425.1 0.58 -0.3
3,317,511 - Xcc-8004.3425.1 0.58 +0.2
3,317,511 - Xcc-8004.3425.1 0.58 -2.4
3,317,511 - Xcc-8004.3425.1 0.58 -0.3
3,317,588 + Xcc-8004.3425.1 0.66 +2.8
3,317,647 + Xcc-8004.3425.1 0.73 +0.9
3,317,647 + Xcc-8004.3425.1 0.73 -0.8
3,317,647 + Xcc-8004.3425.1 0.73 +0.4
3,317,647 + Xcc-8004.3425.1 0.73 +0.0
3,317,647 + Xcc-8004.3425.1 0.73 +0.7
3,317,647 + Xcc-8004.3425.1 0.73 -0.3
3,317,647 + Xcc-8004.3425.1 0.73 +0.6
3,317,647 + Xcc-8004.3425.1 0.73 +0.5
3,317,647 + Xcc-8004.3425.1 0.73 +1.0
3,317,647 + Xcc-8004.3425.1 0.73 +1.1
3,317,647 + Xcc-8004.3425.1 0.73 +0.0
3,317,647 + Xcc-8004.3425.1 0.73 +0.0
3,317,647 + Xcc-8004.3425.1 0.73 -1.6
3,317,647 + Xcc-8004.3425.1 0.73 +0.1
3,317,648 - Xcc-8004.3425.1 0.73 +0.6
3,317,648 - Xcc-8004.3425.1 0.73 +0.1
3,317,648 - Xcc-8004.3425.1 0.73 +1.7
3,317,648 - Xcc-8004.3425.1 0.73 +2.0
3,317,648 - Xcc-8004.3425.1 0.73 -0.8
3,317,648 - Xcc-8004.3425.1 0.73 -0.7
3,317,648 - Xcc-8004.3425.1 0.73 +0.5
3,317,648 - Xcc-8004.3425.1 0.73 +0.3
3,317,696 + Xcc-8004.3425.1 0.78 -0.5
3,317,696 + Xcc-8004.3425.1 0.78 -0.5
3,317,696 + Xcc-8004.3425.1 0.78 -0.7
3,317,696 + Xcc-8004.3425.1 0.78 -1.4
3,317,696 + Xcc-8004.3425.1 0.78 +0.4
3,317,697 - Xcc-8004.3425.1 0.78 -0.9
3,317,697 - Xcc-8004.3425.1 0.78 -1.0
3,317,697 - Xcc-8004.3425.1 0.78 +0.5
3,317,721 + Xcc-8004.3425.1 0.81 +0.2
3,317,721 + Xcc-8004.3425.1 0.81 +0.3
3,317,722 - Xcc-8004.3425.1 0.81 +1.3
3,317,722 - Xcc-8004.3425.1 0.81 -1.3
3,317,722 - Xcc-8004.3425.1 0.81 +0.7
3,317,722 - Xcc-8004.3425.1 0.81 -0.7
3,317,722 - Xcc-8004.3425.1 0.81 +1.0
3,317,728 + Xcc-8004.3425.1 0.82 +0.3
3,317,729 - Xcc-8004.3425.1 0.82 +0.0
3,317,743 + Xcc-8004.3425.1 0.83 +0.1
3,317,744 - Xcc-8004.3425.1 0.83 -0.8
3,317,744 - Xcc-8004.3425.1 0.83 +0.6
3,317,795 + Xcc-8004.3425.1 0.89 -0.1
3,317,795 + Xcc-8004.3425.1 0.89 +0.5
3,318,012 - -0.6
3,318,012 - +1.3
3,318,012 - -0.3
3,318,012 - +0.3
3,318,012 - +0.9
3,318,012 - +0.8
3,318,012 - +0.1
3,318,021 - -0.2
3,318,021 - -0.1
3,318,021 - +0.2
3,318,021 - +0.6
3,318,086 - +0.7
3,318,086 - -1.3
3,318,086 - -0.3
3,318,086 - +0.8
3,318,134 + -0.8
3,318,154 + -1.9
3,318,154 + -1.3
3,318,154 + +1.0
3,318,154 + -3.3
3,318,154 + -1.5
3,318,158 + +0.9
3,318,158 + -1.1
3,318,158 + +1.0
3,318,158 + +1.1
3,318,158 + +0.2
3,318,436 + Xcc-8004.3426.1 0.15 +0.9
3,318,436 + Xcc-8004.3426.1 0.15 -1.2
3,318,667 + Xcc-8004.3426.1 0.35 -0.0
3,318,667 + Xcc-8004.3426.1 0.35 -0.6
3,318,667 + Xcc-8004.3426.1 0.35 +0.1
3,318,667 + Xcc-8004.3426.1 0.35 -0.3
3,318,667 + Xcc-8004.3426.1 0.35 +0.5
3,318,667 + Xcc-8004.3426.1 0.35 +0.1
3,318,667 + Xcc-8004.3426.1 0.35 -0.7
3,318,667 + Xcc-8004.3426.1 0.35 +0.5
3,318,668 - Xcc-8004.3426.1 0.35 +0.4
3,318,668 - Xcc-8004.3426.1 0.35 +3.1
3,318,668 - Xcc-8004.3426.1 0.35 -1.3
3,318,668 - Xcc-8004.3426.1 0.35 +2.1
3,318,668 - Xcc-8004.3426.1 0.35 -0.1
3,318,768 + Xcc-8004.3426.1 0.44 +1.1
3,318,768 + Xcc-8004.3426.1 0.44 +0.8
3,318,768 + Xcc-8004.3426.1 0.44 +1.5
3,318,768 + Xcc-8004.3426.1 0.44 -0.6
3,318,768 + Xcc-8004.3426.1 0.44 +0.0
3,318,768 + Xcc-8004.3426.1 0.44 -1.0
3,318,769 - Xcc-8004.3426.1 0.44 -1.7
3,318,769 - Xcc-8004.3426.1 0.44 -0.1
3,319,042 + Xcc-8004.3426.1 0.68 +0.3
3,319,043 - Xcc-8004.3426.1 0.68 +3.1
3,319,124 + Xcc-8004.3426.1 0.76 -0.5
3,319,124 + Xcc-8004.3426.1 0.76 +0.1
3,319,125 - Xcc-8004.3426.1 0.76 -0.1
3,319,240 + Xcc-8004.3426.1 0.86 -0.1
3,319,241 - Xcc-8004.3426.1 0.86 +1.7
3,319,306 + -0.7
3,319,306 + -0.1
3,319,306 + -1.3
3,319,307 - -2.1
3,319,307 - -0.4
3,319,307 - +0.7
3,319,307 - +0.5
3,319,307 - +3.1
3,319,307 - -1.4
3,319,307 - +0.7
3,319,307 - -0.8
3,319,381 + -0.1
3,319,382 - -0.4
3,319,382 - -0.4
3,319,382 - -0.4
3,319,443 + -0.4
3,319,443 + -0.1
3,319,444 - +2.5
3,319,500 + +0.9
3,319,500 + +1.1
3,319,500 + -0.1
3,319,501 - -0.3
3,319,522 + -0.1
3,319,523 - -1.7
3,319,523 - +0.0
3,319,529 + -1.8
3,319,530 - +0.9
3,319,551 - -1.4
3,319,551 - -0.2
3,319,551 - -0.5

Or see this region's nucleotide sequence