Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3326.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3324.1 and Xcc-8004.3325.1 are separated by 75 nucleotidesXcc-8004.3325.1 and Xcc-8004.3326.1 overlap by 52 nucleotidesXcc-8004.3326.1 and Xcc-8004.3327.1 are separated by 32 nucleotides Xcc-8004.3324.1: Xcc-8004.3324.1 - Carbonic anhydrase (EC 4.2.1.1), at 3,222,511 to 3,223,173 Xcc-8004.3324.1 Xcc-8004.3325.1: Xcc-8004.3325.1 - 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6), at 3,223,249 to 3,223,779 Xcc-8004.3325.1 Xcc-8004.3326.1: Xcc-8004.3326.1 - FIG01212390: hypothetical protein, at 3,223,728 to 3,225,971 Xcc-8004.3326.1 Xcc-8004.3327.1: Xcc-8004.3327.1 - Kynureninase (EC 3.7.1.3), at 3,226,004 to 3,227,275 Xcc-8004.3327.1 Position (kb) 3223 3224 3225 3226Strain fitness (log2 ratio) -3 -2 -1 0 1at 3222.805 kb on + strand, within Xcc-8004.3324.1at 3222.977 kb on + strand, within Xcc-8004.3324.1at 3222.977 kb on + strand, within Xcc-8004.3324.1at 3222.977 kb on + strand, within Xcc-8004.3324.1at 3222.977 kb on + strand, within Xcc-8004.3324.1at 3222.978 kb on - strand, within Xcc-8004.3324.1at 3222.978 kb on - strand, within Xcc-8004.3324.1at 3223.055 kb on - strand, within Xcc-8004.3324.1at 3223.126 kb on + strandat 3223.126 kb on + strandat 3223.126 kb on + strandat 3223.161 kb on + strandat 3223.162 kb on - strandat 3223.162 kb on - strandat 3223.216 kb on + strandat 3223.216 kb on + strandat 3223.216 kb on + strandat 3223.217 kb on - strandat 3223.217 kb on - strandat 3223.217 kb on - strandat 3223.387 kb on + strand, within Xcc-8004.3325.1at 3223.387 kb on + strand, within Xcc-8004.3325.1at 3223.388 kb on - strand, within Xcc-8004.3325.1at 3223.388 kb on - strand, within Xcc-8004.3325.1at 3223.393 kb on + strand, within Xcc-8004.3325.1at 3223.394 kb on - strand, within Xcc-8004.3325.1at 3223.394 kb on - strand, within Xcc-8004.3325.1at 3223.394 kb on - strand, within Xcc-8004.3325.1at 3223.502 kb on + strand, within Xcc-8004.3325.1at 3223.606 kb on + strand, within Xcc-8004.3325.1at 3223.606 kb on + strand, within Xcc-8004.3325.1at 3223.633 kb on + strand, within Xcc-8004.3325.1at 3223.633 kb on + strand, within Xcc-8004.3325.1at 3223.633 kb on + strand, within Xcc-8004.3325.1at 3223.634 kb on - strand, within Xcc-8004.3325.1at 3223.759 kb on + strandat 3223.760 kb on - strandat 3223.760 kb on - strandat 3223.760 kb on - strandat 3224.099 kb on + strand, within Xcc-8004.3326.1at 3224.100 kb on - strand, within Xcc-8004.3326.1at 3225.234 kb on + strand, within Xcc-8004.3326.1at 3225.234 kb on + strand, within Xcc-8004.3326.1at 3225.235 kb on - strand, within Xcc-8004.3326.1at 3225.235 kb on - strand, within Xcc-8004.3326.1at 3225.235 kb on - strand, within Xcc-8004.3326.1at 3225.235 kb on - strand, within Xcc-8004.3326.1at 3225.866 kb on + strandat 3225.866 kb on + strandat 3225.866 kb on + strandat 3225.969 kb on + strandat 3225.970 kb on - strandat 3225.970 kb on - strandat 3225.970 kb on - strandat 3226.115 kb on + strandat 3226.115 kb on + strandat 3226.116 kb on - strandat 3226.116 kb on - strandat 3226.241 kb on + strand, within Xcc-8004.3327.1at 3226.241 kb on + strand, within Xcc-8004.3327.1at 3226.241 kb on + strand, within Xcc-8004.3327.1at 3226.241 kb on + strand, within Xcc-8004.3327.1at 3226.241 kb on + strand, within Xcc-8004.3327.1at 3226.241 kb on + strand, within Xcc-8004.3327.1at 3226.242 kb on - strand, within Xcc-8004.3327.1at 3226.242 kb on - strand, within Xcc-8004.3327.1at 3226.242 kb on - strand, within Xcc-8004.3327.1at 3226.352 kb on + strand, within Xcc-8004.3327.1at 3226.580 kb on + strand, within Xcc-8004.3327.1at 3226.730 kb on + strand, within Xcc-8004.3327.1at 3226.731 kb on - strand, within Xcc-8004.3327.1at 3226.731 kb on - strand, within Xcc-8004.3327.1at 3226.736 kb on + strand, within Xcc-8004.3327.1at 3226.736 kb on + strand, within Xcc-8004.3327.1at 3226.737 kb on - strand, within Xcc-8004.3327.1at 3226.737 kb on - strand, within Xcc-8004.3327.1at 3226.869 kb on + strand, within Xcc-8004.3327.1at 3226.870 kb on - strand, within Xcc-8004.3327.1at 3226.870 kb on - strand, within Xcc-8004.3327.1at 3226.870 kb on - strand, within Xcc-8004.3327.1at 3226.870 kb on - strand, within Xcc-8004.3327.1at 3226.870 kb on - strand, within Xcc-8004.3327.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,222,805 + Xcc-8004.3324.1 0.44 -0.4
3,222,977 + Xcc-8004.3324.1 0.70 -3.0
3,222,977 + Xcc-8004.3324.1 0.70 +0.5
3,222,977 + Xcc-8004.3324.1 0.70 -1.6
3,222,977 + Xcc-8004.3324.1 0.70 +0.6
3,222,978 - Xcc-8004.3324.1 0.70 +0.1
3,222,978 - Xcc-8004.3324.1 0.70 -1.0
3,223,055 - Xcc-8004.3324.1 0.82 -0.7
3,223,126 + -1.4
3,223,126 + -1.4
3,223,126 + -1.6
3,223,161 + -0.4
3,223,162 - -0.3
3,223,162 - -0.6
3,223,216 + +0.1
3,223,216 + -0.3
3,223,216 + -0.0
3,223,217 - +0.2
3,223,217 - +0.5
3,223,217 - -1.0
3,223,387 + Xcc-8004.3325.1 0.26 -1.4
3,223,387 + Xcc-8004.3325.1 0.26 -1.1
3,223,388 - Xcc-8004.3325.1 0.26 -0.2
3,223,388 - Xcc-8004.3325.1 0.26 +0.8
3,223,393 + Xcc-8004.3325.1 0.27 +0.5
3,223,394 - Xcc-8004.3325.1 0.27 -0.3
3,223,394 - Xcc-8004.3325.1 0.27 +1.0
3,223,394 - Xcc-8004.3325.1 0.27 -0.7
3,223,502 + Xcc-8004.3325.1 0.48 -2.5
3,223,606 + Xcc-8004.3325.1 0.67 -0.2
3,223,606 + Xcc-8004.3325.1 0.67 +0.5
3,223,633 + Xcc-8004.3325.1 0.72 +0.1
3,223,633 + Xcc-8004.3325.1 0.72 -0.4
3,223,633 + Xcc-8004.3325.1 0.72 +0.3
3,223,634 - Xcc-8004.3325.1 0.73 +0.7
3,223,759 + -0.6
3,223,760 - -0.2
3,223,760 - -1.0
3,223,760 - +0.1
3,224,099 + Xcc-8004.3326.1 0.17 -0.6
3,224,100 - Xcc-8004.3326.1 0.17 -0.5
3,225,234 + Xcc-8004.3326.1 0.67 -0.9
3,225,234 + Xcc-8004.3326.1 0.67 -0.1
3,225,235 - Xcc-8004.3326.1 0.67 -0.1
3,225,235 - Xcc-8004.3326.1 0.67 -0.0
3,225,235 - Xcc-8004.3326.1 0.67 -0.1
3,225,235 - Xcc-8004.3326.1 0.67 -0.1
3,225,866 + +1.1
3,225,866 + -2.4
3,225,866 + -1.0
3,225,969 + -1.0
3,225,970 - +0.3
3,225,970 - -0.6
3,225,970 - -0.0
3,226,115 + -1.1
3,226,115 + +0.7
3,226,116 - -0.2
3,226,116 - -0.3
3,226,241 + Xcc-8004.3327.1 0.19 +1.1
3,226,241 + Xcc-8004.3327.1 0.19 -1.0
3,226,241 + Xcc-8004.3327.1 0.19 +0.8
3,226,241 + Xcc-8004.3327.1 0.19 -2.0
3,226,241 + Xcc-8004.3327.1 0.19 +0.6
3,226,241 + Xcc-8004.3327.1 0.19 +0.2
3,226,242 - Xcc-8004.3327.1 0.19 -0.5
3,226,242 - Xcc-8004.3327.1 0.19 -0.1
3,226,242 - Xcc-8004.3327.1 0.19 -0.0
3,226,352 + Xcc-8004.3327.1 0.27 +0.7
3,226,580 + Xcc-8004.3327.1 0.45 -1.3
3,226,730 + Xcc-8004.3327.1 0.57 -0.7
3,226,731 - Xcc-8004.3327.1 0.57 +0.5
3,226,731 - Xcc-8004.3327.1 0.57 -1.7
3,226,736 + Xcc-8004.3327.1 0.58 -0.7
3,226,736 + Xcc-8004.3327.1 0.58 +0.8
3,226,737 - Xcc-8004.3327.1 0.58 -0.0
3,226,737 - Xcc-8004.3327.1 0.58 -1.0
3,226,869 + Xcc-8004.3327.1 0.68 -0.1
3,226,870 - Xcc-8004.3327.1 0.68 -0.9
3,226,870 - Xcc-8004.3327.1 0.68 -0.3
3,226,870 - Xcc-8004.3327.1 0.68 +0.1
3,226,870 - Xcc-8004.3327.1 0.68 -0.3
3,226,870 - Xcc-8004.3327.1 0.68 +0.0

Or see this region's nucleotide sequence