Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3246.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,151,559	+				-1.2
3,151,601	+				-0.4
3,151,601	+				+2.8
3,151,601	+				+0.7
3,151,601	+				-0.3
3,151,601	+				-0.6
3,151,601	+				+0.4
3,151,602	-				+0.5
3,151,602	-				-0.5
3,151,602	-				+1.1
3,151,602	-				-1.5
3,151,602	-				-0.6
3,151,602	-				+0.9
3,151,630	+				+3.1
3,151,630	+				+0.6
3,151,630	+				+0.5
3,151,631	-				-1.1
3,151,631	-				-1.9
3,151,631	-				+0.9
3,151,647	+				+0.6
3,151,647	+				-0.9
3,151,647	+				-1.9
3,151,647	+				+0.1
3,151,647	+				-2.4
3,151,647	+				+1.0
3,151,647	+				+1.5
3,151,647	+				-0.5
3,151,647	+				+0.2
3,151,647	+				-0.0
3,151,647	+				+1.3
3,151,648	-				+0.4
3,151,648	-				+0.8
3,151,648	-				+0.9
3,151,649	+				+0.3
3,151,649	+				+0.7
3,151,649	+				+0.8
3,151,650	-				-2.0
3,151,650	-				+0.5
3,151,650	-				+0.1
3,151,650	-				-0.6
3,151,650	-				+0.1
3,151,650	-				+0.9
3,151,850	+		Xcc-8004.3244.1	0.42	+0.6
3,151,851	-		Xcc-8004.3244.1	0.43	+0.4
3,151,851	-		Xcc-8004.3244.1	0.43	-0.4
3,151,986	+		Xcc-8004.3244.1	0.71	+1.1
3,151,987	-		Xcc-8004.3244.1	0.71	+0.8
3,152,094	+				+0.9
3,152,095	-				+0.6
3,152,181	+				+0.8
3,152,181	+				+0.6
3,152,182	-				+0.2
3,152,182	-				+0.3
3,152,213	+				-2.5
3,152,213	+				+0.0
3,152,351	+				-0.6
3,152,351	+				-0.8
3,152,352	-				-0.0
3,152,352	-				+0.9
3,152,435	+				-0.7
3,152,435	+				+0.4
3,152,436	-				-0.8
3,152,436	-				-0.6
3,152,465	+				-0.5
3,152,465	+				-1.1
3,152,466	-				+0.1
3,152,566	+				+1.8
3,152,566	+				+0.9
3,152,566	+				+2.1
3,152,566	+				+0.0
3,152,566	+				+0.8
3,152,567	-				+2.5
3,152,567	-				+0.2
3,152,567	-				+0.6
3,152,567	-				-0.7
3,152,690	-				-0.1
3,152,757	+		Xcc-8004.3246.1	0.70	-0.4
3,152,788	+		Xcc-8004.3246.1	0.79	-0.4
3,152,788	+		Xcc-8004.3246.1	0.79	-2.5
3,152,788	+		Xcc-8004.3246.1	0.79	-0.0
3,152,789	-		Xcc-8004.3246.1	0.80	-1.1
3,152,789	-		Xcc-8004.3246.1	0.80	+0.3
3,152,789	-		Xcc-8004.3246.1	0.80	+0.3
3,152,789	-		Xcc-8004.3246.1	0.80	+0.1
3,152,896	+				-0.0
3,152,903	+				-0.8
3,152,904	-				+1.2
3,152,904	-				-0.6
3,153,019	+				+0.3
3,153,020	-				-2.2
3,153,020	-				-0.2
3,153,103	+		Xcc-8004.3247.1	0.13	+2.5
3,153,103	+		Xcc-8004.3247.1	0.13	-1.2
3,153,104	-		Xcc-8004.3247.1	0.13	+0.5
3,153,244	+		Xcc-8004.3247.1	0.41	-0.8
3,153,244	+		Xcc-8004.3247.1	0.41	-0.8
3,153,244	+		Xcc-8004.3247.1	0.41	+0.1
3,153,244	+		Xcc-8004.3247.1	0.41	+0.8
3,153,245	-		Xcc-8004.3247.1	0.41	+0.4
3,153,245	-		Xcc-8004.3247.1	0.41	-0.2
3,153,245	-		Xcc-8004.3247.1	0.41	-0.7
3,153,245	-		Xcc-8004.3247.1	0.41	-1.2
3,153,245	-		Xcc-8004.3247.1	0.41	-0.6
3,153,245	-		Xcc-8004.3247.1	0.41	-0.4
3,153,245	-		Xcc-8004.3247.1	0.41	-1.0
3,153,265	+		Xcc-8004.3247.1	0.45	-0.7
3,153,265	+		Xcc-8004.3247.1	0.45	+1.0
3,153,265	+		Xcc-8004.3247.1	0.45	-0.2
3,153,265	+		Xcc-8004.3247.1	0.45	+0.1
3,153,266	-		Xcc-8004.3247.1	0.46	+1.1
3,153,266	-		Xcc-8004.3247.1	0.46	+0.5
3,153,266	-		Xcc-8004.3247.1	0.46	+0.3
3,153,280	-		Xcc-8004.3247.1	0.48	-0.2
3,153,287	-		Xcc-8004.3247.1	0.50	-1.4
3,153,287	-		Xcc-8004.3247.1	0.50	-1.7
3,153,287	-		Xcc-8004.3247.1	0.50	-0.3
3,153,296	-		Xcc-8004.3247.1	0.52	-0.0
3,153,302	+		Xcc-8004.3247.1	0.53	+0.1
3,153,302	+		Xcc-8004.3247.1	0.53	+1.9
3,153,302	+		Xcc-8004.3247.1	0.53	+0.5
3,153,302	+		Xcc-8004.3247.1	0.53	-0.2
3,153,303	-		Xcc-8004.3247.1	0.53	+0.8
3,153,303	-		Xcc-8004.3247.1	0.53	-0.1
3,153,304	+		Xcc-8004.3247.1	0.53	-1.0
3,153,304	+		Xcc-8004.3247.1	0.53	+1.0
3,153,304	+		Xcc-8004.3247.1	0.53	+0.3
3,153,304	+		Xcc-8004.3247.1	0.53	+1.4
3,153,305	-		Xcc-8004.3247.1	0.53	+0.9
3,153,362	+		Xcc-8004.3247.1	0.65	-0.0
3,153,485	+		Xcc-8004.3247.1	0.90	-0.5
3,153,486	-		Xcc-8004.3247.1	0.90	+0.4
3,153,486	-		Xcc-8004.3247.1	0.90	-0.1
3,153,486	-		Xcc-8004.3247.1	0.90	-1.6
3,153,486	-		Xcc-8004.3247.1	0.90	-1.0
3,153,486	-		Xcc-8004.3247.1	0.90	-0.3
3,153,528	-				-2.5
3,153,538	+				-1.1
3,153,539	-				-0.6
3,153,545	+				+1.1
3,153,576	+				-0.6
3,153,576	+				-0.2
3,153,576	+				+0.1
3,153,582	+				-1.3
3,153,582	+				-0.9
3,153,634	+				+0.2
3,153,634	+				+0.2
3,153,634	+				+0.4
3,153,635	-				+0.2
3,153,636	+				+0.1
3,153,636	+				+0.3
3,153,636	+				-0.3
3,153,712	+		Xcc-8004.3248.1	0.17	-0.2
3,153,712	+		Xcc-8004.3248.1	0.17	-0.4
3,153,712	+		Xcc-8004.3248.1	0.17	-0.2
3,153,713	-		Xcc-8004.3248.1	0.17	+1.5
3,153,748	+		Xcc-8004.3248.1	0.22	+0.3
3,153,783	+		Xcc-8004.3248.1	0.27	+0.7
3,153,784	-		Xcc-8004.3248.1	0.27	+1.5