Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3228.1 and Xcc-8004.3230.1 are separated by 180 nucleotides Xcc-8004.3230.1 and Xcc-8004.3229.1 are separated by 52 nucleotides Xcc-8004.3229.1 and Xcc-8004.3231.1 are separated by 255 nucleotides Xcc-8004.3231.1 and Xcc-8004.3232.1 overlap by 23 nucleotides
Xcc-8004.3228.1: Xcc-8004.3228.1 - hypothetical protein, at 3,138,141 to 3,138,392
Xcc-8004.3228.1
Xcc-8004.3230.1: Xcc-8004.3230.1 - Phage DNA invertase, at 3,138,573 to 3,139,139
Xcc-8004.3230.1
Xcc-8004.3229.1: Xcc-8004.3229.1 - avirulence protein, at 3,139,192 to 3,140,259
Xcc-8004.3229.1
Xcc-8004.3231.1: Xcc-8004.3231.1 - hypothetical protein, at 3,140,515 to 3,140,955
Xcc-8004.3231.1
Xcc-8004.3232.1: Xcc-8004.3232.1 - Mobile element protein, at 3,140,933 to 3,141,985
Xcc-8004.3232.1
Position (kb) 3139
3140
3141 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3138.241 kb on - strand, within Xcc-8004.3228.1 at 3138.339 kb on + strand, within Xcc-8004.3228.1 at 3138.339 kb on + strand, within Xcc-8004.3228.1 at 3138.339 kb on + strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.476 kb on + strand at 3138.571 kb on + strand at 3138.571 kb on + strand at 3138.577 kb on + strand at 3138.577 kb on + strand at 3138.577 kb on + strand at 3138.577 kb on + strand at 3138.577 kb on + strand at 3138.578 kb on - strand at 3138.578 kb on - strand at 3138.578 kb on - strand at 3138.588 kb on + strand at 3138.589 kb on - strand at 3138.589 kb on - strand at 3138.726 kb on + strand, within Xcc-8004.3230.1 at 3138.727 kb on - strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.099 kb on + strand at 3139.099 kb on + strand at 3139.099 kb on + strand at 3139.100 kb on - strand at 3139.100 kb on - strand at 3139.101 kb on + strand at 3139.102 kb on - strand at 3139.102 kb on - strand at 3139.121 kb on + strand at 3139.121 kb on + strand at 3139.122 kb on - strand at 3139.122 kb on - strand at 3139.295 kb on + strand at 3139.295 kb on + strand at 3139.322 kb on - strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.347 kb on - strand, within Xcc-8004.3229.1 at 3139.347 kb on - strand, within Xcc-8004.3229.1 at 3139.415 kb on + strand, within Xcc-8004.3229.1 at 3139.415 kb on + strand, within Xcc-8004.3229.1 at 3139.416 kb on - strand, within Xcc-8004.3229.1 at 3139.416 kb on - strand, within Xcc-8004.3229.1 at 3139.441 kb on - strand, within Xcc-8004.3229.1 at 3139.441 kb on - strand, within Xcc-8004.3229.1 at 3139.441 kb on - strand, within Xcc-8004.3229.1 at 3139.441 kb on - strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.485 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.571 kb on - strand, within Xcc-8004.3229.1 at 3139.571 kb on - strand, within Xcc-8004.3229.1 at 3139.571 kb on - strand, within Xcc-8004.3229.1 at 3139.590 kb on - strand, within Xcc-8004.3229.1 at 3139.616 kb on - strand, within Xcc-8004.3229.1 at 3139.616 kb on - strand, within Xcc-8004.3229.1 at 3139.676 kb on - strand, within Xcc-8004.3229.1 at 3139.694 kb on + strand, within Xcc-8004.3229.1 at 3139.694 kb on + strand, within Xcc-8004.3229.1 at 3139.703 kb on + strand, within Xcc-8004.3229.1 at 3139.704 kb on - strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.730 kb on - strand, within Xcc-8004.3229.1 at 3139.868 kb on + strand, within Xcc-8004.3229.1 at 3139.868 kb on + strand, within Xcc-8004.3229.1 at 3139.869 kb on - strand, within Xcc-8004.3229.1 at 3139.883 kb on + strand, within Xcc-8004.3229.1 at 3139.883 kb on + strand, within Xcc-8004.3229.1 at 3139.884 kb on - strand, within Xcc-8004.3229.1 at 3140.048 kb on + strand, within Xcc-8004.3229.1 at 3140.048 kb on + strand, within Xcc-8004.3229.1 at 3140.077 kb on + strand, within Xcc-8004.3229.1 at 3140.077 kb on + strand, within Xcc-8004.3229.1 at 3140.078 kb on - strand, within Xcc-8004.3229.1 at 3140.078 kb on - strand, within Xcc-8004.3229.1 at 3140.078 kb on - strand, within Xcc-8004.3229.1 at 3140.078 kb on - strand, within Xcc-8004.3229.1 at 3140.175 kb on + strand at 3140.211 kb on - strand at 3140.211 kb on - strand at 3140.251 kb on + strand at 3140.251 kb on + strand at 3140.251 kb on + strand at 3140.251 kb on + strand at 3140.252 kb on - strand at 3140.252 kb on - strand at 3140.252 kb on - strand at 3140.292 kb on + strand at 3140.510 kb on + strand at 3140.510 kb on + strand at 3140.511 kb on - strand at 3140.557 kb on - strand at 3140.608 kb on + strand, within Xcc-8004.3231.1 at 3140.608 kb on + strand, within Xcc-8004.3231.1 at 3140.609 kb on - strand, within Xcc-8004.3231.1 at 3140.657 kb on + strand, within Xcc-8004.3231.1 at 3140.658 kb on - strand, within Xcc-8004.3231.1 at 3140.791 kb on + strand, within Xcc-8004.3231.1 at 3140.854 kb on - strand, within Xcc-8004.3231.1 at 3140.925 kb on - strand at 3140.925 kb on - strand at 3140.925 kb on - strand at 3140.935 kb on - strand at 3140.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,138,241 - Xcc-8004.3228.1 0.40 -0.1 3,138,339 + Xcc-8004.3228.1 0.79 +0.5 3,138,339 + Xcc-8004.3228.1 0.79 -0.5 3,138,339 + Xcc-8004.3228.1 0.79 -1.1 3,138,340 - Xcc-8004.3228.1 0.79 +2.3 3,138,340 - Xcc-8004.3228.1 0.79 +2.1 3,138,340 - Xcc-8004.3228.1 0.79 -1.8 3,138,340 - Xcc-8004.3228.1 0.79 -0.4 3,138,340 - Xcc-8004.3228.1 0.79 -0.9 3,138,340 - Xcc-8004.3228.1 0.79 +0.8 3,138,340 - Xcc-8004.3228.1 0.79 -0.2 3,138,476 + -2.2 3,138,571 + -0.3 3,138,571 + +0.7 3,138,577 + +0.8 3,138,577 + +1.9 3,138,577 + +0.3 3,138,577 + -0.4 3,138,577 + -0.1 3,138,578 - -0.1 3,138,578 - +1.2 3,138,578 - -0.8 3,138,588 + +0.5 3,138,589 - -0.1 3,138,589 - -0.3 3,138,726 + Xcc-8004.3230.1 0.27 +0.7 3,138,727 - Xcc-8004.3230.1 0.27 +0.1 3,139,052 + Xcc-8004.3230.1 0.84 +0.1 3,139,052 + Xcc-8004.3230.1 0.84 -0.5 3,139,052 + Xcc-8004.3230.1 0.84 +1.1 3,139,052 + Xcc-8004.3230.1 0.84 +1.1 3,139,052 + Xcc-8004.3230.1 0.84 -0.1 3,139,099 + -0.1 3,139,099 + +0.2 3,139,099 + -0.5 3,139,100 - +0.6 3,139,100 - +2.1 3,139,101 + -0.6 3,139,102 - -1.5 3,139,102 - -0.1 3,139,121 + +0.5 3,139,121 + +2.7 3,139,122 - +1.1 3,139,122 - +2.3 3,139,295 + +0.3 3,139,295 + +0.3 3,139,322 - Xcc-8004.3229.1 0.12 -0.4 3,139,346 + Xcc-8004.3229.1 0.14 -0.1 3,139,346 + Xcc-8004.3229.1 0.14 +1.1 3,139,346 + Xcc-8004.3229.1 0.14 -0.4 3,139,346 + Xcc-8004.3229.1 0.14 +0.9 3,139,346 + Xcc-8004.3229.1 0.14 -0.1 3,139,346 + Xcc-8004.3229.1 0.14 -0.8 3,139,347 - Xcc-8004.3229.1 0.15 +0.1 3,139,347 - Xcc-8004.3229.1 0.15 -0.4 3,139,415 + Xcc-8004.3229.1 0.21 +0.5 3,139,415 + Xcc-8004.3229.1 0.21 +1.5 3,139,416 - Xcc-8004.3229.1 0.21 -1.5 3,139,416 - Xcc-8004.3229.1 0.21 -0.1 3,139,441 - Xcc-8004.3229.1 0.23 +0.5 3,139,441 - Xcc-8004.3229.1 0.23 -1.2 3,139,441 - Xcc-8004.3229.1 0.23 -1.7 3,139,441 - Xcc-8004.3229.1 0.23 -0.4 3,139,472 + Xcc-8004.3229.1 0.26 +1.1 3,139,472 + Xcc-8004.3229.1 0.26 +1.2 3,139,472 + Xcc-8004.3229.1 0.26 -0.8 3,139,472 + Xcc-8004.3229.1 0.26 -0.7 3,139,472 + Xcc-8004.3229.1 0.26 -1.2 3,139,473 - Xcc-8004.3229.1 0.26 +0.7 3,139,473 - Xcc-8004.3229.1 0.26 -1.8 3,139,473 - Xcc-8004.3229.1 0.26 -1.6 3,139,473 - Xcc-8004.3229.1 0.26 -0.6 3,139,473 - Xcc-8004.3229.1 0.26 -0.2 3,139,485 + Xcc-8004.3229.1 0.27 +0.9 3,139,570 + Xcc-8004.3229.1 0.35 -1.5 3,139,570 + Xcc-8004.3229.1 0.35 -1.7 3,139,570 + Xcc-8004.3229.1 0.35 -0.4 3,139,570 + Xcc-8004.3229.1 0.35 +0.2 3,139,570 + Xcc-8004.3229.1 0.35 +0.1 3,139,571 - Xcc-8004.3229.1 0.35 +0.3 3,139,571 - Xcc-8004.3229.1 0.35 -0.1 3,139,571 - Xcc-8004.3229.1 0.35 -2.4 3,139,590 - Xcc-8004.3229.1 0.37 +0.3 3,139,616 - Xcc-8004.3229.1 0.40 +0.0 3,139,616 - Xcc-8004.3229.1 0.40 -0.7 3,139,676 - Xcc-8004.3229.1 0.45 -0.6 3,139,694 + Xcc-8004.3229.1 0.47 +0.8 3,139,694 + Xcc-8004.3229.1 0.47 -1.6 3,139,703 + Xcc-8004.3229.1 0.48 +0.1 3,139,704 - Xcc-8004.3229.1 0.48 -0.5 3,139,729 + Xcc-8004.3229.1 0.50 -0.6 3,139,729 + Xcc-8004.3229.1 0.50 -0.7 3,139,729 + Xcc-8004.3229.1 0.50 -1.1 3,139,729 + Xcc-8004.3229.1 0.50 -0.1 3,139,729 + Xcc-8004.3229.1 0.50 +0.5 3,139,729 + Xcc-8004.3229.1 0.50 -0.2 3,139,730 - Xcc-8004.3229.1 0.50 -1.2 3,139,868 + Xcc-8004.3229.1 0.63 +0.2 3,139,868 + Xcc-8004.3229.1 0.63 +1.0 3,139,869 - Xcc-8004.3229.1 0.63 -0.2 3,139,883 + Xcc-8004.3229.1 0.65 -0.2 3,139,883 + Xcc-8004.3229.1 0.65 -0.1 3,139,884 - Xcc-8004.3229.1 0.65 -0.3 3,140,048 + Xcc-8004.3229.1 0.80 +0.1 3,140,048 + Xcc-8004.3229.1 0.80 +0.4 3,140,077 + Xcc-8004.3229.1 0.83 +0.8 3,140,077 + Xcc-8004.3229.1 0.83 +0.8 3,140,078 - Xcc-8004.3229.1 0.83 +0.0 3,140,078 - Xcc-8004.3229.1 0.83 -0.5 3,140,078 - Xcc-8004.3229.1 0.83 +0.8 3,140,078 - Xcc-8004.3229.1 0.83 -0.8 3,140,175 + +0.7 3,140,211 - +0.3 3,140,211 - -0.2 3,140,251 + -0.4 3,140,251 + -0.2 3,140,251 + +0.1 3,140,251 + +0.5 3,140,252 - -0.5 3,140,252 - -0.4 3,140,252 - +0.1 3,140,292 + -1.6 3,140,510 + -1.0 3,140,510 + +1.5 3,140,511 - -0.1 3,140,557 - +0.4 3,140,608 + Xcc-8004.3231.1 0.21 +0.3 3,140,608 + Xcc-8004.3231.1 0.21 -0.2 3,140,609 - Xcc-8004.3231.1 0.21 +0.4 3,140,657 + Xcc-8004.3231.1 0.32 +0.4 3,140,658 - Xcc-8004.3231.1 0.32 -0.2 3,140,791 + Xcc-8004.3231.1 0.63 +1.9 3,140,854 - Xcc-8004.3231.1 0.77 +0.5 3,140,925 - +0.0 3,140,925 - +0.1 3,140,925 - +0.3 3,140,935 - -0.1 3,140,935 - +0.7
Or see this region's nucleotide sequence