Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3125.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,052,811	-				-0.3
3,052,811	-				-1.7
3,052,811	-				-1.4
3,052,811	-				+0.2
3,052,811	-				+0.1
3,052,819	-				-1.6
3,052,819	-				-0.1
3,052,819	-				-0.4
3,052,842	-				-1.7
3,052,851	-				+0.5
3,052,851	-				-0.0
3,052,851	-				-0.7
3,052,851	-				+1.1
3,052,851	-				+0.5
3,052,851	-				+2.1
3,052,851	-				+0.5
3,052,851	-				-0.8
3,052,851	-				-2.4
3,052,851	-				+0.7
3,052,851	-				-0.8
3,052,851	-				+0.2
3,052,851	-				-0.4
3,052,851	-				-0.6
3,053,512	+				-0.8
3,053,512	+				-0.9
3,053,560	+				+0.9
3,053,560	+				+0.6
3,053,560	+				-0.7
3,053,560	+				-0.5
3,053,561	-				+0.8
3,053,561	-				-0.1
3,053,561	-				-1.3
3,053,561	-				+1.1
3,053,561	-				-0.1
3,053,561	-				+0.4
3,053,896	+				-0.3
3,053,896	+				+1.3
3,053,897	-				-0.5
3,053,897	-				+0.7
3,053,897	-				-0.9
3,053,897	-				-1.9
3,053,897	-				+0.1
3,053,902	+				-0.2
3,053,902	+				-0.6
3,053,902	+				-0.4
3,053,902	+				-0.4
3,053,902	+				-0.2
3,053,902	+				+1.0
3,053,902	+				-0.3
3,053,902	+				+0.2
3,053,902	+				-1.1
3,053,902	+				+1.5
3,053,903	-				+0.9
3,053,909	+		Xcc-8004.3128.1	0.11	+0.8
3,054,108	+		Xcc-8004.3128.1	0.64	+0.5
3,054,184	+		Xcc-8004.3128.1	0.84	-0.9
3,054,184	+		Xcc-8004.3128.1	0.84	-1.6
3,054,184	+		Xcc-8004.3128.1	0.84	-0.1
3,054,184	+		Xcc-8004.3128.1	0.84	+1.2
3,054,184	+		Xcc-8004.3128.1	0.84	-1.1
3,054,184	+		Xcc-8004.3128.1	0.84	-0.4
3,054,184	+		Xcc-8004.3128.1	0.84	-0.4
3,054,185	-		Xcc-8004.3128.1	0.84	-3.4
3,054,185	-		Xcc-8004.3128.1	0.84	-1.6
3,054,185	-		Xcc-8004.3128.1	0.84	+0.6
3,054,185	-		Xcc-8004.3128.1	0.84	+0.6
3,054,185	-		Xcc-8004.3128.1	0.84	-0.4
3,054,185	-		Xcc-8004.3128.1	0.84	+0.7
3,054,185	-		Xcc-8004.3128.1	0.84	-0.0
3,054,185	-		Xcc-8004.3128.1	0.84	+0.6
3,054,233	+				-1.4
3,054,233	+				-0.1
3,054,233	+				+0.5
3,054,234	-				-0.1
3,054,234	-				+1.1
3,054,367	+				-1.3
3,054,372	+				+0.5
3,054,395	-				+0.6
3,054,446	-				+0.8