Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3121.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,047,666	+		Xcc-8004.3119.1	0.53	-1.1
3,047,666	+		Xcc-8004.3119.1	0.53	+0.1
3,047,955	+		Xcc-8004.3119.1	0.75	+0.4
3,047,999	+		Xcc-8004.3119.1	0.78	+2.3
3,048,000	-		Xcc-8004.3119.1	0.79	-0.7
3,048,000	-		Xcc-8004.3119.1	0.79	+0.1
3,048,132	+		Xcc-8004.3119.1	0.89	+1.5
3,048,133	-		Xcc-8004.3119.1	0.89	+0.4
3,048,133	-		Xcc-8004.3119.1	0.89	-0.3
3,048,287	+				-1.0
3,048,288	-				-0.2
3,048,288	-				-1.2
3,048,288	-				-0.4
3,048,288	-				-0.1
3,048,288	-				-1.2
3,048,288	-				-0.0
3,048,288	-				-0.3
3,048,288	-				+1.3
3,048,346	+		Xcc-8004.3120.1	0.19	+3.1
3,048,347	-		Xcc-8004.3120.1	0.19	-2.7
3,048,347	-		Xcc-8004.3120.1	0.19	-0.7
3,048,347	-		Xcc-8004.3120.1	0.19	-0.9
3,048,347	-		Xcc-8004.3120.1	0.19	-0.3
3,048,591	-				+0.5
3,048,591	-				-0.0
3,048,591	-				+0.1
3,048,591	-				-1.0
3,048,591	-				-1.6
3,048,591	-				-0.8
3,048,591	-				-0.8
3,048,599	+				+0.8
3,048,600	-				-0.4
3,048,600	-				-2.0
3,048,650	+				+2.1
3,048,650	+				+0.1
3,048,650	+				-0.9
3,048,650	+				-0.8
3,048,650	+				+0.2
3,048,651	-				+0.3
3,048,651	-				+1.8
3,048,651	-				-0.3
3,048,651	-				+0.1
3,049,406	+		Xcc-8004.3121.1	0.77	+0.8
3,049,714	-				+0.2
3,049,714	-				+0.1
3,049,714	-				-0.1
3,049,714	-				-0.0