Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3070.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,002,608	+		Xcc-8004.3067.1	0.76	-1.6
3,002,608	+		Xcc-8004.3067.1	0.76	-0.4
3,002,609	-		Xcc-8004.3067.1	0.76	-0.8
3,002,609	-		Xcc-8004.3067.1	0.76	-0.2
3,002,692	+		Xcc-8004.3067.1	0.79	-1.6
3,002,693	-		Xcc-8004.3067.1	0.79	+0.1
3,002,693	-		Xcc-8004.3067.1	0.79	-0.7
3,002,693	-		Xcc-8004.3067.1	0.79	-0.3
3,002,693	-		Xcc-8004.3067.1	0.79	-1.1
3,002,693	-		Xcc-8004.3067.1	0.79	-0.7
3,002,713	+		Xcc-8004.3067.1	0.80	-0.2
3,002,713	+		Xcc-8004.3067.1	0.80	+0.5
3,002,713	+		Xcc-8004.3067.1	0.80	+0.7
3,002,713	+		Xcc-8004.3067.1	0.80	+0.0
3,002,714	-		Xcc-8004.3067.1	0.80	-0.9
3,002,714	-		Xcc-8004.3067.1	0.80	+0.1
3,002,803	+		Xcc-8004.3067.1	0.83	+0.2
3,002,803	+		Xcc-8004.3067.1	0.83	+1.9
3,002,803	+		Xcc-8004.3067.1	0.83	-2.7
3,002,803	+		Xcc-8004.3067.1	0.83	-0.3
3,002,804	-		Xcc-8004.3067.1	0.83	-0.7
3,002,804	-		Xcc-8004.3067.1	0.83	-0.0
3,002,804	-		Xcc-8004.3067.1	0.83	+0.6
3,002,804	-		Xcc-8004.3067.1	0.83	+0.5
3,002,851	+		Xcc-8004.3067.1	0.84	+0.0
3,002,851	+		Xcc-8004.3067.1	0.84	-1.2
3,002,851	+		Xcc-8004.3067.1	0.84	-1.0
3,002,852	-		Xcc-8004.3067.1	0.84	+1.7
3,002,852	-		Xcc-8004.3067.1	0.84	-0.4
3,002,852	-		Xcc-8004.3067.1	0.84	-0.2
3,002,852	-		Xcc-8004.3067.1	0.84	-0.2
3,003,202	+				-0.0
3,003,202	+				-0.4
3,003,203	-				-1.6
3,003,203	-				+1.8
3,003,203	-				-1.8
3,003,203	-				+2.1
3,003,413	-				+0.3
3,003,413	-				+0.5
3,003,432	-				+0.2
3,003,446	-				-0.0
3,003,446	-				-0.0
3,003,536	+				+0.9
3,003,555	+				+0.2
3,003,555	+				+0.0
3,003,555	+				-0.3
3,003,555	+				-0.1
3,003,555	+				-0.5
3,003,555	+				+1.4
3,003,555	+				-0.6
3,003,555	+				+0.6
3,003,555	+				+0.2
3,003,555	+				+0.0
3,003,555	+				+0.5
3,003,561	+				+0.5
3,003,561	+				+1.1
3,003,561	+				+0.1
3,003,561	+				+0.1
3,003,561	+				+0.1
3,003,561	+				-0.1
3,003,561	+				+0.7
3,003,562	-				+1.5
3,003,562	-				+1.0
3,003,562	-				-0.0
3,003,562	-				-0.4
3,003,562	-				-0.5
3,003,562	-				+0.5
3,003,562	-				+0.7
3,003,615	+				+0.9
3,003,669	+				-0.2
3,003,669	+				-1.0
3,003,670	-				+0.6
3,003,693	+				-2.2
3,003,694	-				+0.2
3,003,855	+		Xcc-8004.3070.1	0.17	+0.4
3,003,855	+		Xcc-8004.3070.1	0.17	-0.2
3,003,855	+		Xcc-8004.3070.1	0.17	-1.2
3,003,856	-		Xcc-8004.3070.1	0.17	+0.8
3,003,856	-		Xcc-8004.3070.1	0.17	+0.6
3,003,856	-		Xcc-8004.3070.1	0.17	-0.6
3,003,856	-		Xcc-8004.3070.1	0.17	-0.2
3,003,974	+		Xcc-8004.3070.1	0.24	-0.9
3,003,974	+		Xcc-8004.3070.1	0.24	+0.3
3,003,974	+		Xcc-8004.3070.1	0.24	+0.8
3,003,974	+		Xcc-8004.3070.1	0.24	-0.4
3,003,974	+		Xcc-8004.3070.1	0.24	-0.5
3,003,974	+		Xcc-8004.3070.1	0.24	-0.8
3,003,975	-		Xcc-8004.3070.1	0.24	-0.2
3,003,975	-		Xcc-8004.3070.1	0.24	-0.1
3,003,980	+		Xcc-8004.3070.1	0.25	-1.0
3,003,980	+		Xcc-8004.3070.1	0.25	+0.8
3,003,980	+		Xcc-8004.3070.1	0.25	+0.1
3,003,980	+		Xcc-8004.3070.1	0.25	-0.0
3,003,980	+		Xcc-8004.3070.1	0.25	-0.3
3,003,981	-		Xcc-8004.3070.1	0.25	-0.7
3,003,981	-		Xcc-8004.3070.1	0.25	+0.4
3,004,048	-		Xcc-8004.3070.1	0.28	-0.2
3,004,048	-		Xcc-8004.3070.1	0.28	-1.2
3,004,048	-		Xcc-8004.3070.1	0.28	-0.3
3,004,048	-		Xcc-8004.3070.1	0.28	-1.3
3,004,056	+		Xcc-8004.3070.1	0.29	-2.2
3,004,057	-		Xcc-8004.3070.1	0.29	+0.1
3,004,057	-		Xcc-8004.3070.1	0.29	-1.2
3,004,065	+		Xcc-8004.3070.1	0.29	-1.1
3,004,065	+		Xcc-8004.3070.1	0.29	+0.7
3,004,065	+		Xcc-8004.3070.1	0.29	-0.0
3,004,065	+		Xcc-8004.3070.1	0.29	-0.5
3,004,065	+		Xcc-8004.3070.1	0.29	+0.1
3,004,065	+		Xcc-8004.3070.1	0.29	-1.0
3,004,065	+		Xcc-8004.3070.1	0.29	-1.3
3,004,065	+		Xcc-8004.3070.1	0.29	-0.1
3,004,065	+		Xcc-8004.3070.1	0.29	+0.8
3,004,066	-		Xcc-8004.3070.1	0.30	+0.1
3,004,066	-		Xcc-8004.3070.1	0.30	-0.2
3,004,122	+		Xcc-8004.3070.1	0.33	+0.9
3,004,122	+		Xcc-8004.3070.1	0.33	-0.6
3,004,132	-		Xcc-8004.3070.1	0.33	-0.4
3,004,206	+		Xcc-8004.3070.1	0.38	-0.9
3,004,206	+		Xcc-8004.3070.1	0.38	-1.8
3,004,206	+		Xcc-8004.3070.1	0.38	+0.3
3,004,206	+		Xcc-8004.3070.1	0.38	+0.9
3,004,206	+		Xcc-8004.3070.1	0.38	-0.5
3,004,206	+		Xcc-8004.3070.1	0.38	+0.4
3,004,206	+		Xcc-8004.3070.1	0.38	+1.3
3,004,206	+		Xcc-8004.3070.1	0.38	-1.4
3,004,206	+		Xcc-8004.3070.1	0.38	-0.2
3,004,207	-		Xcc-8004.3070.1	0.38	-0.9
3,004,207	-		Xcc-8004.3070.1	0.38	-0.2
3,004,207	-		Xcc-8004.3070.1	0.38	-1.1
3,004,207	-		Xcc-8004.3070.1	0.38	+1.2
3,004,207	-		Xcc-8004.3070.1	0.38	-1.6
3,004,207	-		Xcc-8004.3070.1	0.38	+1.2
3,004,207	-		Xcc-8004.3070.1	0.38	-0.3
3,004,227	+		Xcc-8004.3070.1	0.39	-0.3
3,004,227	+		Xcc-8004.3070.1	0.39	-0.5
3,004,227	+		Xcc-8004.3070.1	0.39	-0.3
3,004,227	+		Xcc-8004.3070.1	0.39	-2.5
3,004,227	+		Xcc-8004.3070.1	0.39	-0.0
3,004,227	+		Xcc-8004.3070.1	0.39	-0.9
3,004,227	+		Xcc-8004.3070.1	0.39	+0.3
3,004,227	+		Xcc-8004.3070.1	0.39	+0.5
3,004,227	+		Xcc-8004.3070.1	0.39	-0.6
3,004,227	+		Xcc-8004.3070.1	0.39	+1.9
3,004,227	+		Xcc-8004.3070.1	0.39	-1.1
3,004,227	+		Xcc-8004.3070.1	0.39	+0.0
3,004,227	+		Xcc-8004.3070.1	0.39	-0.7
3,004,227	+		Xcc-8004.3070.1	0.39	+0.1
3,004,227	+		Xcc-8004.3070.1	0.39	+0.1
3,004,227	+		Xcc-8004.3070.1	0.39	+0.7
3,004,227	+		Xcc-8004.3070.1	0.39	-0.5
3,004,227	-		Xcc-8004.3070.1	0.39	+1.6
3,004,228	-		Xcc-8004.3070.1	0.39	-0.1
3,004,228	-		Xcc-8004.3070.1	0.39	+1.5
3,004,228	-		Xcc-8004.3070.1	0.39	-0.8
3,004,228	-		Xcc-8004.3070.1	0.39	-1.6
3,004,228	-		Xcc-8004.3070.1	0.39	+1.1
3,004,228	-		Xcc-8004.3070.1	0.39	+0.3
3,004,228	-		Xcc-8004.3070.1	0.39	-0.4
3,004,228	-		Xcc-8004.3070.1	0.39	+1.2
3,004,228	-		Xcc-8004.3070.1	0.39	-0.2
3,004,228	-		Xcc-8004.3070.1	0.39	-1.3
3,004,228	-		Xcc-8004.3070.1	0.39	+0.2
3,004,228	-		Xcc-8004.3070.1	0.39	+0.6
3,004,228	-		Xcc-8004.3070.1	0.39	-0.3
3,004,228	-		Xcc-8004.3070.1	0.39	-0.4
3,004,228	-		Xcc-8004.3070.1	0.39	+0.5
3,004,228	-		Xcc-8004.3070.1	0.39	-0.4
3,004,228	-		Xcc-8004.3070.1	0.39	+0.5
3,004,228	-		Xcc-8004.3070.1	0.39	-1.7
3,004,252	+		Xcc-8004.3070.1	0.40	-2.2
3,004,362	+		Xcc-8004.3070.1	0.47	+1.5
3,004,362	+		Xcc-8004.3070.1	0.47	+0.1
3,004,362	+		Xcc-8004.3070.1	0.47	+0.3
3,004,362	+		Xcc-8004.3070.1	0.47	-1.4
3,004,362	+		Xcc-8004.3070.1	0.47	-0.1
3,004,363	-		Xcc-8004.3070.1	0.47	+0.1
3,004,363	-		Xcc-8004.3070.1	0.47	-0.9
3,004,363	-		Xcc-8004.3070.1	0.47	-0.0
3,004,363	-		Xcc-8004.3070.1	0.47	-0.4
3,004,377	+		Xcc-8004.3070.1	0.47	+1.2
3,004,378	-		Xcc-8004.3070.1	0.48	+0.1
3,004,378	-		Xcc-8004.3070.1	0.48	-0.5
3,004,413	+		Xcc-8004.3070.1	0.50	+0.8
3,004,413	+		Xcc-8004.3070.1	0.50	-2.1
3,004,413	+		Xcc-8004.3070.1	0.50	+0.4
3,004,414	-		Xcc-8004.3070.1	0.50	+0.2
3,004,414	-		Xcc-8004.3070.1	0.50	-0.5
3,004,572	+		Xcc-8004.3070.1	0.59	-0.4
3,004,572	+		Xcc-8004.3070.1	0.59	+0.8
3,004,572	+		Xcc-8004.3070.1	0.59	-0.1
3,004,572	+		Xcc-8004.3070.1	0.59	-0.4
3,004,573	-		Xcc-8004.3070.1	0.59	-0.3
3,004,573	-		Xcc-8004.3070.1	0.59	-0.0
3,004,573	-		Xcc-8004.3070.1	0.59	-0.9
3,004,573	-		Xcc-8004.3070.1	0.59	-0.6
3,004,573	-		Xcc-8004.3070.1	0.59	+0.2
3,004,779	+		Xcc-8004.3070.1	0.71	+0.2
3,004,779	+		Xcc-8004.3070.1	0.71	+1.1
3,004,986	+		Xcc-8004.3070.1	0.83	-0.5
3,004,986	+		Xcc-8004.3070.1	0.83	-0.4
3,004,986	+		Xcc-8004.3070.1	0.83	-1.1
3,004,986	+		Xcc-8004.3070.1	0.83	+1.3
3,004,986	+		Xcc-8004.3070.1	0.83	+1.2
3,004,987	-		Xcc-8004.3070.1	0.83	-1.7
3,004,987	-		Xcc-8004.3070.1	0.83	+0.5
3,005,134	+				-0.0
3,005,135	-				+0.9
3,005,135	-				+0.4
3,005,293	+				-0.5
3,005,293	+				-1.2
3,005,293	+				+0.3
3,005,293	+				+0.9
3,005,293	+				+0.4
3,005,293	+				+1.3
3,005,293	+				-1.2
3,005,293	+				-1.2
3,005,293	+				-1.3
3,005,293	+				-0.5
3,005,293	+				-1.4
3,005,293	+				-0.3
3,005,293	+				-0.0
3,005,294	-				+1.9
3,005,294	-				-0.7
3,005,294	-				+0.7
3,005,294	-				-1.2
3,005,294	-				+0.3
3,005,294	-				+2.1
3,005,294	-				-0.2
3,005,294	-				+1.5
3,005,294	-				-0.5
3,005,294	-				-0.1
3,005,294	-				+0.6
3,005,313	+				-1.6
3,005,511	+		Xcc-8004.3071.1	0.11	+1.3
3,005,511	+		Xcc-8004.3071.1	0.11	-1.7
3,005,579	+		Xcc-8004.3071.1	0.14	-1.2
3,005,579	+		Xcc-8004.3071.1	0.14	+0.5
3,005,579	+		Xcc-8004.3071.1	0.14	+0.1
3,005,579	+		Xcc-8004.3071.1	0.14	+1.0
3,005,579	+		Xcc-8004.3071.1	0.14	+0.8
3,005,580	-		Xcc-8004.3071.1	0.14	+0.1
3,005,580	-		Xcc-8004.3071.1	0.14	-0.7
3,005,609	+		Xcc-8004.3071.1	0.16	+0.3
3,005,609	+		Xcc-8004.3071.1	0.16	-0.4
3,005,609	+		Xcc-8004.3071.1	0.16	-1.1
3,005,609	+		Xcc-8004.3071.1	0.16	-0.0
3,005,609	+		Xcc-8004.3071.1	0.16	+0.4
3,005,609	+		Xcc-8004.3071.1	0.16	-0.5
3,005,610	-		Xcc-8004.3071.1	0.16	+0.6
3,005,610	-		Xcc-8004.3071.1	0.16	+0.7
3,005,610	-		Xcc-8004.3071.1	0.16	+0.7
3,005,610	-		Xcc-8004.3071.1	0.16	-1.7
3,005,610	-		Xcc-8004.3071.1	0.16	-0.3
3,005,610	-		Xcc-8004.3071.1	0.16	-0.1
3,005,611	+		Xcc-8004.3071.1	0.16	-0.5
3,005,611	+		Xcc-8004.3071.1	0.16	-0.4
3,005,611	+		Xcc-8004.3071.1	0.16	-2.3
3,005,612	-		Xcc-8004.3071.1	0.16	+0.8
3,005,612	-		Xcc-8004.3071.1	0.16	+4.7
3,005,612	-		Xcc-8004.3071.1	0.16	-2.2
3,005,612	-		Xcc-8004.3071.1	0.16	+0.4
3,005,665	+		Xcc-8004.3071.1	0.19	+0.2
3,005,665	+		Xcc-8004.3071.1	0.19	+1.2
3,005,665	+		Xcc-8004.3071.1	0.19	-0.5
3,005,665	+		Xcc-8004.3071.1	0.19	+0.0
3,005,665	+		Xcc-8004.3071.1	0.19	-0.6
3,005,665	+		Xcc-8004.3071.1	0.19	-1.3
3,005,665	+		Xcc-8004.3071.1	0.19	-1.1
3,005,665	+		Xcc-8004.3071.1	0.19	-2.0
3,005,665	+		Xcc-8004.3071.1	0.19	-1.4
3,005,665	+		Xcc-8004.3071.1	0.19	-0.4
3,005,666	-		Xcc-8004.3071.1	0.19	+0.3
3,005,666	-		Xcc-8004.3071.1	0.19	-0.7
3,005,666	-		Xcc-8004.3071.1	0.19	-2.4
3,005,666	-		Xcc-8004.3071.1	0.19	-0.7
3,005,666	-		Xcc-8004.3071.1	0.19	-0.4
3,005,907	-		Xcc-8004.3071.1	0.31	+0.0
3,006,002	+		Xcc-8004.3071.1	0.36	+0.4
3,006,002	+		Xcc-8004.3071.1	0.36	+0.2
3,006,002	+		Xcc-8004.3071.1	0.36	+1.7
3,006,002	+		Xcc-8004.3071.1	0.36	-1.6
3,006,002	+		Xcc-8004.3071.1	0.36	-0.0
3,006,003	-		Xcc-8004.3071.1	0.36	-1.4
3,006,003	-		Xcc-8004.3071.1	0.36	+5.1
3,006,003	-		Xcc-8004.3071.1	0.36	-0.2
3,006,003	-		Xcc-8004.3071.1	0.36	+1.1
3,006,003	-		Xcc-8004.3071.1	0.36	-1.6
3,006,215	+		Xcc-8004.3071.1	0.48	-0.8
3,006,215	+		Xcc-8004.3071.1	0.48	+0.2
3,006,215	+		Xcc-8004.3071.1	0.48	-0.3
3,006,215	+		Xcc-8004.3071.1	0.48	+0.2
3,006,215	+		Xcc-8004.3071.1	0.48	-0.5
3,006,215	+		Xcc-8004.3071.1	0.48	-0.3
3,006,215	+		Xcc-8004.3071.1	0.48	-1.4
3,006,215	+		Xcc-8004.3071.1	0.48	+1.2
3,006,216	-		Xcc-8004.3071.1	0.48	+0.5
3,006,216	-		Xcc-8004.3071.1	0.48	-0.6
3,006,216	-		Xcc-8004.3071.1	0.48	-0.9
3,006,216	-		Xcc-8004.3071.1	0.48	-1.2
3,006,216	-		Xcc-8004.3071.1	0.48	-0.4
3,006,216	-		Xcc-8004.3071.1	0.48	-0.4
3,006,216	-		Xcc-8004.3071.1	0.48	-0.1
3,006,216	-		Xcc-8004.3071.1	0.48	-1.0
3,006,216	-		Xcc-8004.3071.1	0.48	+0.4
3,006,216	-		Xcc-8004.3071.1	0.48	-0.2
3,006,272	+		Xcc-8004.3071.1	0.51	-0.4
3,006,272	+		Xcc-8004.3071.1	0.51	-0.2
3,006,272	+		Xcc-8004.3071.1	0.51	+1.1
3,006,272	+		Xcc-8004.3071.1	0.51	+0.1
3,006,272	+		Xcc-8004.3071.1	0.51	-0.3
3,006,272	+		Xcc-8004.3071.1	0.51	+0.9
3,006,272	+		Xcc-8004.3071.1	0.51	-0.7
3,006,272	+		Xcc-8004.3071.1	0.51	+0.8
3,006,272	+		Xcc-8004.3071.1	0.51	+0.2
3,006,272	+		Xcc-8004.3071.1	0.51	-0.7
3,006,272	+		Xcc-8004.3071.1	0.51	+0.4
3,006,272	+		Xcc-8004.3071.1	0.51	+0.1
3,006,272	+		Xcc-8004.3071.1	0.51	-0.6
3,006,272	+		Xcc-8004.3071.1	0.51	+0.2
3,006,273	-		Xcc-8004.3071.1	0.51	-0.3
3,006,273	-		Xcc-8004.3071.1	0.51	-1.2
3,006,273	-		Xcc-8004.3071.1	0.51	-1.0
3,006,273	-		Xcc-8004.3071.1	0.51	+2.6
3,006,273	-		Xcc-8004.3071.1	0.51	-0.5
3,006,273	-		Xcc-8004.3071.1	0.51	-0.1