Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2900.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,822,484	+		Xcc-8004.2898.1	0.85	-0.5
2,822,484	+		Xcc-8004.2898.1	0.85	-1.2
2,822,484	+		Xcc-8004.2898.1	0.85	+1.8
2,822,484	+		Xcc-8004.2898.1	0.85	+1.5
2,822,485	-		Xcc-8004.2898.1	0.85	+0.5
2,822,485	-		Xcc-8004.2898.1	0.85	+1.2
2,822,538	+		Xcc-8004.2898.1	0.88	+0.3
2,822,538	+		Xcc-8004.2898.1	0.88	-0.6
2,822,538	+		Xcc-8004.2898.1	0.88	+0.8
2,822,538	+		Xcc-8004.2898.1	0.88	+1.7
2,822,539	-		Xcc-8004.2898.1	0.88	+0.5
2,822,663	-				-1.0
2,822,698	-				-0.7
2,822,698	-				-0.2
2,822,803	+				-0.7
2,822,804	-				-0.7
2,822,804	-				-0.4
2,822,870	+				-0.3
2,822,870	+				+0.1
2,822,871	-				+0.1
2,822,919	-		Xcc-8004.2899.1	0.18	-0.7
2,822,933	+		Xcc-8004.2899.1	0.20	+1.2
2,822,933	+		Xcc-8004.2899.1	0.20	-1.0
2,822,933	+		Xcc-8004.2899.1	0.20	-1.1
2,822,933	+		Xcc-8004.2899.1	0.20	-0.2
2,822,934	-		Xcc-8004.2899.1	0.20	+0.2
2,822,934	-		Xcc-8004.2899.1	0.20	-0.9
2,822,934	-		Xcc-8004.2899.1	0.20	-0.5
2,822,934	-		Xcc-8004.2899.1	0.20	-0.3
2,822,934	-		Xcc-8004.2899.1	0.20	+0.1
2,822,992	+		Xcc-8004.2899.1	0.29	+0.4
2,822,992	+		Xcc-8004.2899.1	0.29	+0.9
2,822,992	+		Xcc-8004.2899.1	0.29	-1.2
2,822,993	-		Xcc-8004.2899.1	0.30	-0.0
2,822,993	-		Xcc-8004.2899.1	0.30	+0.5
2,823,000	-		Xcc-8004.2899.1	0.31	-0.5
2,823,000	-		Xcc-8004.2899.1	0.31	+0.2
2,823,000	-		Xcc-8004.2899.1	0.31	-0.9
2,823,000	-		Xcc-8004.2899.1	0.31	+0.4
2,823,047	+		Xcc-8004.2899.1	0.38	+0.5
2,823,048	-		Xcc-8004.2899.1	0.39	-0.0
2,823,109	+		Xcc-8004.2899.1	0.48	-0.3
2,823,109	+		Xcc-8004.2899.1	0.48	+0.9
2,823,109	+		Xcc-8004.2899.1	0.48	-1.0
2,823,109	+		Xcc-8004.2899.1	0.48	-1.0
2,823,110	-		Xcc-8004.2899.1	0.49	+0.4
2,823,110	-		Xcc-8004.2899.1	0.49	-0.8
2,823,110	-		Xcc-8004.2899.1	0.49	+0.0
2,823,110	-		Xcc-8004.2899.1	0.49	+1.0
2,823,111	+		Xcc-8004.2899.1	0.49	-1.6
2,823,111	+		Xcc-8004.2899.1	0.49	+0.8
2,823,112	-		Xcc-8004.2899.1	0.49	-0.8
2,823,112	-		Xcc-8004.2899.1	0.49	+0.4
2,823,112	-		Xcc-8004.2899.1	0.49	+0.5
2,823,112	-		Xcc-8004.2899.1	0.49	+0.3
2,823,112	-		Xcc-8004.2899.1	0.49	+0.2
2,823,112	-		Xcc-8004.2899.1	0.49	-0.7
2,823,163	+		Xcc-8004.2899.1	0.57	+0.8
2,823,163	+		Xcc-8004.2899.1	0.57	+0.2
2,823,163	+		Xcc-8004.2899.1	0.57	+0.9
2,823,163	+		Xcc-8004.2899.1	0.57	+0.2
2,823,164	-		Xcc-8004.2899.1	0.57	-1.2
2,823,328	+		Xcc-8004.2899.1	0.84	+0.5
2,823,328	+		Xcc-8004.2899.1	0.84	-1.2
2,823,328	+		Xcc-8004.2899.1	0.84	+0.3
2,823,360	+		Xcc-8004.2899.1	0.89	-0.1
2,823,360	+		Xcc-8004.2899.1	0.89	-0.1
2,823,361	-		Xcc-8004.2899.1	0.89	+0.8
2,823,554	+		Xcc-8004.2900.1	0.10	+0.8
2,823,554	+		Xcc-8004.2900.1	0.10	+0.7
2,823,555	-		Xcc-8004.2900.1	0.10	+0.2
2,823,555	-		Xcc-8004.2900.1	0.10	-0.4
2,823,555	-		Xcc-8004.2900.1	0.10	-1.1
2,823,555	-		Xcc-8004.2900.1	0.10	-0.9
2,823,561	-		Xcc-8004.2900.1	0.11	+2.0
2,823,561	-		Xcc-8004.2900.1	0.11	+1.3
2,823,565	+		Xcc-8004.2900.1	0.11	+1.0
2,823,565	+		Xcc-8004.2900.1	0.11	+0.6
2,823,566	-		Xcc-8004.2900.1	0.11	+1.1
2,823,596	+		Xcc-8004.2900.1	0.14	-0.6
2,823,596	+		Xcc-8004.2900.1	0.14	+1.2
2,823,596	+		Xcc-8004.2900.1	0.14	+0.5
2,823,596	+		Xcc-8004.2900.1	0.14	-2.4
2,823,597	-		Xcc-8004.2900.1	0.14	+0.5
2,823,597	-		Xcc-8004.2900.1	0.14	-0.5
2,823,597	-		Xcc-8004.2900.1	0.14	+0.8
2,823,597	-		Xcc-8004.2900.1	0.14	+0.4
2,823,779	+		Xcc-8004.2900.1	0.30	+1.0
2,824,404	-		Xcc-8004.2900.1	0.85	-1.6
2,824,540	+				+0.5
2,824,540	+				+0.9
2,824,540	+				+2.1
2,824,540	+				+3.1
2,824,541	-				+0.3
2,824,541	-				+1.1
2,824,541	-				+1.3
2,824,541	-				+0.5
2,824,541	-				-0.1
2,824,541	-				-0.0
2,824,541	-				-2.6
2,824,541	-				+0.6
2,824,541	-				+0.1
2,824,541	-				-0.7
2,824,558	+				+0.9
2,824,559	-				-1.0
2,824,573	-				+1.2
2,824,573	-				-0.0
2,824,664	+				-0.5
2,824,664	+				+2.3
2,824,664	+				+0.6
2,824,665	-				+0.4
2,824,669	+				+1.7
2,824,669	+				+0.6
2,824,669	+				+0.1
2,824,669	+				-1.9
2,824,669	+				-0.7
2,824,669	+				+0.8
2,824,669	+				+1.0
2,824,669	+				+2.7
2,824,669	+				-0.8
2,824,669	+				-1.2
2,824,669	+				-1.1
2,824,669	+				+0.2
2,824,669	+				-0.8
2,824,669	+				+0.5
2,824,669	+				+1.5
2,824,670	-				+0.0
2,824,670	-				-1.6
2,824,670	-				-1.4
2,824,670	-				+0.2
2,824,670	-				+0.2
2,824,670	-				+0.2
2,824,670	-				-0.1
2,824,670	-				-0.6
2,824,670	-				+0.3
2,824,670	-				+0.4
2,824,670	-				-1.0
2,824,676	+				+1.8
2,824,676	+				-0.9
2,824,676	+				-0.6
2,824,676	+				-0.2
2,824,676	+				+1.6
2,824,676	+				+0.1
2,824,676	+				-1.2
2,824,676	+				+0.1
2,824,676	+				-0.2
2,824,677	-				+0.9
2,824,677	-				-1.0
2,824,677	-				-0.2
2,824,677	-				+0.5
2,824,677	-				+1.4
2,824,677	-				-0.1
2,824,677	-				-0.7
2,824,677	-				-0.8
2,824,677	-				+0.4