Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2745.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,659,118	+		Xcc-8004.2744.1	0.55	+0.2
2,659,118	+		Xcc-8004.2744.1	0.55	+0.1
2,659,119	-		Xcc-8004.2744.1	0.55	-0.1
2,659,119	-		Xcc-8004.2744.1	0.55	-0.6
2,659,119	-		Xcc-8004.2744.1	0.55	-0.9
2,659,119	-		Xcc-8004.2744.1	0.55	-1.4
2,659,525	-		Xcc-8004.2744.1	0.86	-1.3
2,659,525	-		Xcc-8004.2744.1	0.86	+0.8
2,659,672	+				-1.2
2,659,673	-				-0.0
2,659,695	-				-0.3
2,659,695	-				+0.1
2,659,779	+				+0.7
2,659,780	-				-0.1
2,659,780	-				+0.1
2,659,780	-				+0.4
2,659,780	-				-0.4
2,659,880	+				+1.3
2,659,880	+				-1.4
2,659,880	+				-0.7
2,659,880	+				+0.7
2,659,881	-				-0.0
2,659,881	-				+0.2
2,659,881	-				+0.3
2,659,881	-				+0.2
2,659,881	-				-0.2
2,659,881	-				-1.6
2,659,881	-				-0.7
2,659,884	+				-0.2
2,659,885	-				-1.7
2,659,885	-				-0.0
2,659,885	-				+0.4
2,659,929	+				+0.8
2,659,929	+				+0.2
2,659,929	+				+0.5
2,659,929	+				-0.4
2,659,929	+				+1.2
2,659,929	+				-2.4
2,659,929	+				+0.6
2,659,929	+				+1.1
2,659,929	+				-0.3
2,659,930	-				+0.7
2,659,930	-				-0.9
2,659,930	-				+1.2
2,659,930	-				-0.1
2,659,930	-				+0.7
2,659,930	-				+1.9
2,659,930	-				+0.1
2,659,994	+				-1.0
2,660,112	-				-0.2
2,660,349	+				-0.4
2,660,380	+				-0.8
2,660,380	+				-1.0
2,660,476	+		Xcc-8004.2745.1	0.11	-1.3
2,660,476	+		Xcc-8004.2745.1	0.11	+0.9
2,660,477	-		Xcc-8004.2745.1	0.11	-0.1
2,660,547	+		Xcc-8004.2745.1	0.13	-1.0
2,660,547	+		Xcc-8004.2745.1	0.13	-0.4
2,660,984	+		Xcc-8004.2745.1	0.23	+0.6
2,660,984	+		Xcc-8004.2745.1	0.23	+0.4
2,660,984	+		Xcc-8004.2745.1	0.23	+2.2
2,660,985	-		Xcc-8004.2745.1	0.23	+0.3
2,660,985	-		Xcc-8004.2745.1	0.23	-1.1
2,661,004	+		Xcc-8004.2745.1	0.24	-0.6
2,661,005	-		Xcc-8004.2745.1	0.24	-1.2
2,661,015	+		Xcc-8004.2745.1	0.24	-0.7
2,661,015	+		Xcc-8004.2745.1	0.24	-1.6
2,661,016	-		Xcc-8004.2745.1	0.24	-0.6
2,661,016	-		Xcc-8004.2745.1	0.24	+2.1
2,661,016	-		Xcc-8004.2745.1	0.24	-1.6
2,661,016	-		Xcc-8004.2745.1	0.24	+0.3
2,661,016	-		Xcc-8004.2745.1	0.24	-1.0
2,661,179	+		Xcc-8004.2745.1	0.28	-0.5
2,661,179	+		Xcc-8004.2745.1	0.28	-0.2
2,661,179	+		Xcc-8004.2745.1	0.28	-1.5
2,661,179	+		Xcc-8004.2745.1	0.28	+0.5
2,661,179	+		Xcc-8004.2745.1	0.28	-1.0
2,661,180	-		Xcc-8004.2745.1	0.28	+0.1
2,661,180	-		Xcc-8004.2745.1	0.28	-1.0
2,661,218	-		Xcc-8004.2745.1	0.29	-0.7
2,661,229	+		Xcc-8004.2745.1	0.29	-0.0
2,661,229	+		Xcc-8004.2745.1	0.29	+0.8
2,661,230	-		Xcc-8004.2745.1	0.29	+0.7
2,661,230	-		Xcc-8004.2745.1	0.29	+4.4
2,661,401	-		Xcc-8004.2745.1	0.33	-1.6
2,661,670	+		Xcc-8004.2745.1	0.40	+0.2
2,661,671	-		Xcc-8004.2745.1	0.40	-1.2
2,661,671	-		Xcc-8004.2745.1	0.40	-0.3
2,661,671	-		Xcc-8004.2745.1	0.40	+0.0
2,661,671	-		Xcc-8004.2745.1	0.40	-1.7
2,662,020	+		Xcc-8004.2745.1	0.48	-0.1
2,662,020	+		Xcc-8004.2745.1	0.48	-2.0
2,662,047	+		Xcc-8004.2745.1	0.49	-0.5
2,662,047	+		Xcc-8004.2745.1	0.49	-0.9
2,662,048	-		Xcc-8004.2745.1	0.49	-0.9
2,662,048	-		Xcc-8004.2745.1	0.49	+0.4
2,662,118	+		Xcc-8004.2745.1	0.51	-0.6
2,662,118	+		Xcc-8004.2745.1	0.51	+0.3
2,662,340	-		Xcc-8004.2745.1	0.56	-0.9
2,662,384	+		Xcc-8004.2745.1	0.57	-0.8
2,662,385	-		Xcc-8004.2745.1	0.57	-0.2
2,662,724	-		Xcc-8004.2745.1	0.65	-1.0
2,662,778	+		Xcc-8004.2745.1	0.66	-0.7
2,662,779	-		Xcc-8004.2745.1	0.67	-2.1
2,662,779	-		Xcc-8004.2745.1	0.67	-1.1
2,662,779	-		Xcc-8004.2745.1	0.67	+0.6
2,662,779	-		Xcc-8004.2745.1	0.67	+0.3
2,662,808	+		Xcc-8004.2745.1	0.67	-0.9
2,662,809	-		Xcc-8004.2745.1	0.67	+0.4
2,662,908	+		Xcc-8004.2745.1	0.70	-1.0
2,662,908	+		Xcc-8004.2745.1	0.70	+0.4
2,662,908	+		Xcc-8004.2745.1	0.70	+0.5
2,662,909	-		Xcc-8004.2745.1	0.70	-0.4
2,662,909	-		Xcc-8004.2745.1	0.70	-0.0
2,662,909	-		Xcc-8004.2745.1	0.70	-0.8
2,662,909	-		Xcc-8004.2745.1	0.70	+0.3
2,662,909	-		Xcc-8004.2745.1	0.70	+0.8
2,662,974	-		Xcc-8004.2745.1	0.71	-0.2
2,663,096	-		Xcc-8004.2745.1	0.74	+0.3
2,663,096	-		Xcc-8004.2745.1	0.74	+0.3
2,663,230	+		Xcc-8004.2745.1	0.77	-1.1
2,663,230	+		Xcc-8004.2745.1	0.77	-0.6
2,663,231	-		Xcc-8004.2745.1	0.77	+0.9
2,663,231	-		Xcc-8004.2745.1	0.77	+1.0
2,663,231	-		Xcc-8004.2745.1	0.77	-0.7
2,663,326	+		Xcc-8004.2745.1	0.80	+0.2
2,663,326	+		Xcc-8004.2745.1	0.80	+0.9
2,663,327	-		Xcc-8004.2745.1	0.80	-1.2
2,663,386	+		Xcc-8004.2745.1	0.81	-0.1
2,663,433	+		Xcc-8004.2745.1	0.82	-0.4
2,663,433	+		Xcc-8004.2745.1	0.82	-0.1
2,663,433	+		Xcc-8004.2745.1	0.82	+1.7
2,663,434	-		Xcc-8004.2745.1	0.82	-0.4
2,663,434	-		Xcc-8004.2745.1	0.82	-1.4
2,663,434	-		Xcc-8004.2745.1	0.82	+0.7
2,663,434	-		Xcc-8004.2745.1	0.82	+0.3
2,663,446	+		Xcc-8004.2745.1	0.83	-1.3
2,663,446	+		Xcc-8004.2745.1	0.83	-0.6
2,663,446	+		Xcc-8004.2745.1	0.83	+0.3
2,663,447	-		Xcc-8004.2745.1	0.83	+1.5
2,663,447	-		Xcc-8004.2745.1	0.83	+0.7
2,663,597	+		Xcc-8004.2745.1	0.86	+0.1
2,663,597	+		Xcc-8004.2745.1	0.86	-0.9
2,663,598	-		Xcc-8004.2745.1	0.86	+0.0
2,663,627	+		Xcc-8004.2745.1	0.87	+0.0
2,663,627	+		Xcc-8004.2745.1	0.87	-1.9
2,663,627	+		Xcc-8004.2745.1	0.87	+0.5
2,663,627	+		Xcc-8004.2745.1	0.87	-0.8
2,663,627	+		Xcc-8004.2745.1	0.87	-0.0
2,663,627	+		Xcc-8004.2745.1	0.87	-0.3
2,663,627	+		Xcc-8004.2745.1	0.87	-0.8
2,663,628	-		Xcc-8004.2745.1	0.87	-0.7
2,663,628	-		Xcc-8004.2745.1	0.87	+0.7
2,663,628	-		Xcc-8004.2745.1	0.87	+0.6
2,663,628	-		Xcc-8004.2745.1	0.87	-1.2
2,663,628	-		Xcc-8004.2745.1	0.87	-2.3
2,663,743	+		Xcc-8004.2745.1	0.90	+0.7
2,663,743	+		Xcc-8004.2745.1	0.90	-0.2
2,663,744	-		Xcc-8004.2745.1	0.90	+0.5
2,663,755	-		Xcc-8004.2745.1	0.90	-0.2
2,663,799	+				-1.2
2,663,799	+				+0.1
2,663,799	+				-0.1
2,663,799	+				-0.9
2,663,800	-				-0.5
2,663,800	-				-0.2
2,663,852	+				+0.9
2,663,853	-				-0.4
2,663,853	-				+1.0
2,663,853	-				-1.0
2,663,853	-				+0.8
2,663,853	-				+0.2
2,663,896	+				+0.3
2,663,896	+				+0.7
2,663,947	+				+1.5
2,663,947	+				+0.6
2,663,948	-				+0.5
2,663,948	-				+0.4
2,663,951	-				-0.0
2,664,171	+				-1.2
2,664,293	+				-0.5
2,664,293	+				+0.4
2,664,293	+				-0.7
2,664,293	+				-0.5
2,664,293	+				-0.2
2,664,294	-				+0.2
2,664,294	-				+0.3
2,664,294	-				-2.2
2,664,294	-				-1.1
2,664,964	-				+0.6
2,664,964	-				-0.8
2,664,964	-				+3.1
2,664,964	-				+0.5
2,664,964	-				+1.0
2,664,964	-				+1.9
2,664,964	-				-0.0
2,664,982	+				-0.9
2,664,983	-				-0.3
2,665,040	-				-0.1
2,665,063	-				-1.2
2,665,101	+				-0.1
2,665,101	+				-0.1
2,665,101	+				-0.3
2,665,101	+				-0.0
2,665,102	-				+0.0
2,665,102	-				+0.8
2,665,102	-				-0.4
2,665,102	-				-1.7