Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2722.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2721.1 and Xcc-8004.2722.1 are separated by 125 nucleotidesXcc-8004.2722.1 and Xcc-8004.2723.1 are separated by 61 nucleotides Xcc-8004.2721.1: Xcc-8004.2721.1 - Exodeoxyribonuclease III (EC 3.1.11.2), at 2,632,800 to 2,633,903 Xcc-8004.2721.1 Xcc-8004.2722.1: Xcc-8004.2722.1 - Putative outer membrane or secreted lipoprotein, at 2,634,029 to 2,634,784 Xcc-8004.2722.1 Xcc-8004.2723.1: Xcc-8004.2723.1 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 2,634,846 to 2,636,015 Xcc-8004.2723.1 Position (kb) 2634 2635Strain fitness (log2 ratio) -2 -1 0 1 2at 2633.079 kb on - strand, within Xcc-8004.2721.1at 2633.079 kb on - strand, within Xcc-8004.2721.1at 2633.246 kb on - strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.383 kb on + strand, within Xcc-8004.2721.1at 2633.384 kb on - strand, within Xcc-8004.2721.1at 2633.384 kb on - strand, within Xcc-8004.2721.1at 2633.384 kb on - strand, within Xcc-8004.2721.1at 2633.497 kb on + strand, within Xcc-8004.2721.1at 2633.498 kb on - strand, within Xcc-8004.2721.1at 2633.536 kb on - strand, within Xcc-8004.2721.1at 2633.536 kb on - strand, within Xcc-8004.2721.1at 2633.536 kb on - strand, within Xcc-8004.2721.1at 2633.536 kb on - strand, within Xcc-8004.2721.1at 2633.539 kb on + strand, within Xcc-8004.2721.1at 2633.539 kb on + strand, within Xcc-8004.2721.1at 2633.539 kb on + strand, within Xcc-8004.2721.1at 2633.539 kb on + strand, within Xcc-8004.2721.1at 2633.540 kb on - strand, within Xcc-8004.2721.1at 2633.581 kb on + strand, within Xcc-8004.2721.1at 2633.631 kb on + strand, within Xcc-8004.2721.1at 2633.839 kb on + strandat 2633.839 kb on + strandat 2633.840 kb on - strandat 2633.840 kb on - strandat 2633.840 kb on - strandat 2633.840 kb on - strandat 2633.852 kb on + strandat 2633.852 kb on + strandat 2633.852 kb on + strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.910 kb on + strandat 2633.918 kb on + strandat 2633.995 kb on + strandat 2634.097 kb on + strandat 2634.098 kb on - strandat 2634.194 kb on + strand, within Xcc-8004.2722.1at 2634.194 kb on + strand, within Xcc-8004.2722.1at 2634.194 kb on + strand, within Xcc-8004.2722.1at 2634.195 kb on - strand, within Xcc-8004.2722.1at 2634.195 kb on - strand, within Xcc-8004.2722.1at 2634.195 kb on - strand, within Xcc-8004.2722.1at 2634.195 kb on - strand, within Xcc-8004.2722.1at 2634.254 kb on + strand, within Xcc-8004.2722.1at 2634.254 kb on + strand, within Xcc-8004.2722.1at 2634.255 kb on - strand, within Xcc-8004.2722.1at 2634.255 kb on - strand, within Xcc-8004.2722.1at 2634.308 kb on - strand, within Xcc-8004.2722.1at 2634.338 kb on + strand, within Xcc-8004.2722.1at 2634.339 kb on - strand, within Xcc-8004.2722.1at 2634.339 kb on - strand, within Xcc-8004.2722.1at 2634.491 kb on + strand, within Xcc-8004.2722.1at 2634.491 kb on + strand, within Xcc-8004.2722.1at 2634.847 kb on + strandat 2634.847 kb on + strandat 2634.848 kb on - strandat 2634.902 kb on - strandat 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2635.067 kb on + strand, within Xcc-8004.2723.1at 2635.081 kb on + strand, within Xcc-8004.2723.1at 2635.082 kb on - strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.190 kb on - strand, within Xcc-8004.2723.1at 2635.190 kb on - strand, within Xcc-8004.2723.1at 2635.190 kb on - strand, within Xcc-8004.2723.1at 2635.190 kb on - strand, within Xcc-8004.2723.1at 2635.307 kb on - strand, within Xcc-8004.2723.1at 2635.454 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.632 kb on - strand, within Xcc-8004.2723.1at 2635.632 kb on - strand, within Xcc-8004.2723.1at 2635.633 kb on + strand, within Xcc-8004.2723.1at 2635.634 kb on - strand, within Xcc-8004.2723.1at 2635.639 kb on + strand, within Xcc-8004.2723.1at 2635.639 kb on + strand, within Xcc-8004.2723.1at 2635.639 kb on + strand, within Xcc-8004.2723.1at 2635.755 kb on - strand, within Xcc-8004.2723.1at 2635.755 kb on - strand, within Xcc-8004.2723.1at 2635.768 kb on - strand, within Xcc-8004.2723.1at 2635.768 kb on - strand, within Xcc-8004.2723.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
2,633,079 - Xcc-8004.2721.1 0.25 -0.4
2,633,079 - Xcc-8004.2721.1 0.25 -0.4
2,633,246 - Xcc-8004.2721.1 0.40 -1.6
2,633,383 + Xcc-8004.2721.1 0.53 -0.2
2,633,383 + Xcc-8004.2721.1 0.53 -0.2
2,633,383 + Xcc-8004.2721.1 0.53 -0.5
2,633,383 + Xcc-8004.2721.1 0.53 +1.6
2,633,383 + Xcc-8004.2721.1 0.53 +0.0
2,633,383 + Xcc-8004.2721.1 0.53 -0.6
2,633,383 + Xcc-8004.2721.1 0.53 -1.3
2,633,383 + Xcc-8004.2721.1 0.53 -0.0
2,633,383 + Xcc-8004.2721.1 0.53 +1.2
2,633,383 + Xcc-8004.2721.1 0.53 +0.3
2,633,384 - Xcc-8004.2721.1 0.53 -0.2
2,633,384 - Xcc-8004.2721.1 0.53 -0.7
2,633,384 - Xcc-8004.2721.1 0.53 -1.0
2,633,497 + Xcc-8004.2721.1 0.63 +0.0
2,633,498 - Xcc-8004.2721.1 0.63 +0.6
2,633,536 - Xcc-8004.2721.1 0.67 +0.8
2,633,536 - Xcc-8004.2721.1 0.67 -0.4
2,633,536 - Xcc-8004.2721.1 0.67 +0.0
2,633,536 - Xcc-8004.2721.1 0.67 -2.7
2,633,539 + Xcc-8004.2721.1 0.67 +0.1
2,633,539 + Xcc-8004.2721.1 0.67 +1.9
2,633,539 + Xcc-8004.2721.1 0.67 -0.5
2,633,539 + Xcc-8004.2721.1 0.67 +0.2
2,633,540 - Xcc-8004.2721.1 0.67 +0.9
2,633,581 + Xcc-8004.2721.1 0.71 -0.8
2,633,631 + Xcc-8004.2721.1 0.75 +1.1
2,633,839 + -0.3
2,633,839 + -2.4
2,633,840 - +1.7
2,633,840 - +0.1
2,633,840 - -0.9
2,633,840 - -0.2
2,633,852 + -0.3
2,633,852 + -0.6
2,633,852 + -1.6
2,633,853 - +0.3
2,633,853 - -1.0
2,633,853 - -1.1
2,633,853 - +0.1
2,633,853 - +0.4
2,633,853 - -1.9
2,633,910 + +0.1
2,633,918 + -0.8
2,633,995 + +0.8
2,634,097 + +0.2
2,634,098 - +0.5
2,634,194 + Xcc-8004.2722.1 0.22 -0.7
2,634,194 + Xcc-8004.2722.1 0.22 -0.6
2,634,194 + Xcc-8004.2722.1 0.22 -1.5
2,634,195 - Xcc-8004.2722.1 0.22 -0.2
2,634,195 - Xcc-8004.2722.1 0.22 +0.2
2,634,195 - Xcc-8004.2722.1 0.22 -0.4
2,634,195 - Xcc-8004.2722.1 0.22 -0.0
2,634,254 + Xcc-8004.2722.1 0.30 +0.3
2,634,254 + Xcc-8004.2722.1 0.30 +0.8
2,634,255 - Xcc-8004.2722.1 0.30 -0.1
2,634,255 - Xcc-8004.2722.1 0.30 -1.8
2,634,308 - Xcc-8004.2722.1 0.37 -0.9
2,634,338 + Xcc-8004.2722.1 0.41 +0.2
2,634,339 - Xcc-8004.2722.1 0.41 -0.4
2,634,339 - Xcc-8004.2722.1 0.41 +0.5
2,634,491 + Xcc-8004.2722.1 0.61 +2.1
2,634,491 + Xcc-8004.2722.1 0.61 -0.7
2,634,847 + +0.5
2,634,847 + +1.8
2,634,848 - -2.0
2,634,902 - +0.3
2,634,997 + Xcc-8004.2723.1 0.13 -1.0
2,634,997 + Xcc-8004.2723.1 0.13 +0.5
2,634,997 + Xcc-8004.2723.1 0.13 -2.1
2,634,997 + Xcc-8004.2723.1 0.13 -0.3
2,634,997 + Xcc-8004.2723.1 0.13 +0.2
2,634,997 + Xcc-8004.2723.1 0.13 -1.2
2,634,997 + Xcc-8004.2723.1 0.13 +0.4
2,634,997 + Xcc-8004.2723.1 0.13 +0.0
2,634,997 + Xcc-8004.2723.1 0.13 +0.8
2,634,997 + Xcc-8004.2723.1 0.13 +0.3
2,634,997 + Xcc-8004.2723.1 0.13 -1.2
2,634,997 + Xcc-8004.2723.1 0.13 +1.8
2,634,997 + Xcc-8004.2723.1 0.13 -0.5
2,634,998 - Xcc-8004.2723.1 0.13 -0.3
2,634,998 - Xcc-8004.2723.1 0.13 -0.9
2,634,998 - Xcc-8004.2723.1 0.13 +1.9
2,634,998 - Xcc-8004.2723.1 0.13 -1.2
2,634,998 - Xcc-8004.2723.1 0.13 +0.2
2,634,998 - Xcc-8004.2723.1 0.13 +0.2
2,634,998 - Xcc-8004.2723.1 0.13 +0.1
2,634,998 - Xcc-8004.2723.1 0.13 -0.6
2,634,998 - Xcc-8004.2723.1 0.13 -0.9
2,635,067 + Xcc-8004.2723.1 0.19 +0.1
2,635,081 + Xcc-8004.2723.1 0.20 -1.0
2,635,082 - Xcc-8004.2723.1 0.20 +0.1
2,635,189 + Xcc-8004.2723.1 0.29 +0.3
2,635,189 + Xcc-8004.2723.1 0.29 -0.2
2,635,189 + Xcc-8004.2723.1 0.29 -1.1
2,635,189 + Xcc-8004.2723.1 0.29 +0.5
2,635,189 + Xcc-8004.2723.1 0.29 +0.6
2,635,189 + Xcc-8004.2723.1 0.29 +0.0
2,635,190 - Xcc-8004.2723.1 0.29 +1.1
2,635,190 - Xcc-8004.2723.1 0.29 -2.1
2,635,190 - Xcc-8004.2723.1 0.29 +0.2
2,635,190 - Xcc-8004.2723.1 0.29 +0.2
2,635,307 - Xcc-8004.2723.1 0.39 +0.4
2,635,454 + Xcc-8004.2723.1 0.52 -0.3
2,635,591 + Xcc-8004.2723.1 0.64 -0.1
2,635,591 + Xcc-8004.2723.1 0.64 +0.1
2,635,591 + Xcc-8004.2723.1 0.64 +0.5
2,635,591 + Xcc-8004.2723.1 0.64 -1.4
2,635,591 + Xcc-8004.2723.1 0.64 +0.7
2,635,591 + Xcc-8004.2723.1 0.64 +0.1
2,635,591 + Xcc-8004.2723.1 0.64 -0.7
2,635,591 + Xcc-8004.2723.1 0.64 +0.3
2,635,591 + Xcc-8004.2723.1 0.64 -1.2
2,635,591 + Xcc-8004.2723.1 0.64 -0.5
2,635,592 - Xcc-8004.2723.1 0.64 -1.7
2,635,592 - Xcc-8004.2723.1 0.64 -0.3
2,635,592 - Xcc-8004.2723.1 0.64 +0.2
2,635,592 - Xcc-8004.2723.1 0.64 +1.1
2,635,592 - Xcc-8004.2723.1 0.64 +1.0
2,635,592 - Xcc-8004.2723.1 0.64 -0.5
2,635,592 - Xcc-8004.2723.1 0.64 -0.8
2,635,592 - Xcc-8004.2723.1 0.64 -1.0
2,635,631 + Xcc-8004.2723.1 0.67 -0.9
2,635,631 + Xcc-8004.2723.1 0.67 -0.6
2,635,631 + Xcc-8004.2723.1 0.67 -0.2
2,635,631 + Xcc-8004.2723.1 0.67 -0.2
2,635,631 + Xcc-8004.2723.1 0.67 +0.1
2,635,632 - Xcc-8004.2723.1 0.67 +0.9
2,635,632 - Xcc-8004.2723.1 0.67 +0.0
2,635,633 + Xcc-8004.2723.1 0.67 -0.4
2,635,634 - Xcc-8004.2723.1 0.67 -0.2
2,635,639 + Xcc-8004.2723.1 0.68 +1.0
2,635,639 + Xcc-8004.2723.1 0.68 -1.1
2,635,639 + Xcc-8004.2723.1 0.68 -1.4
2,635,755 - Xcc-8004.2723.1 0.78 -0.6
2,635,755 - Xcc-8004.2723.1 0.78 +0.7
2,635,768 - Xcc-8004.2723.1 0.79 -0.8
2,635,768 - Xcc-8004.2723.1 0.79 -1.7

Or see this region's nucleotide sequence