Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2718.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2716.1 and Xcc-8004.2717.1 are separated by 24 nucleotidesXcc-8004.2717.1 and Xcc-8004.2718.1 overlap by 17 nucleotidesXcc-8004.2718.1 and Xcc-8004.2719.1 are separated by 46 nucleotides Xcc-8004.2716.1: Xcc-8004.2716.1 - Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4), at 2,629,111 to 2,630,109 Xcc-8004.2716.1 Xcc-8004.2717.1: Xcc-8004.2717.1 - FIG01211851: hypothetical protein, at 2,630,134 to 2,630,496 Xcc-8004.2717.1 Xcc-8004.2718.1: Xcc-8004.2718.1 - hypothetical protein, at 2,630,480 to 2,631,058 Xcc-8004.2718.1 Xcc-8004.2719.1: Xcc-8004.2719.1 - Molybdopterin biosynthesis protein MoeA, at 2,631,105 to 2,632,355 Xcc-8004.2719.1 Position (kb) 2630 2631 2632Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2629.592 kb on - strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.914 kb on - strand, within Xcc-8004.2716.1at 2629.928 kb on + strand, within Xcc-8004.2716.1at 2629.928 kb on + strand, within Xcc-8004.2716.1at 2630.458 kb on - strand, within Xcc-8004.2717.1at 2630.525 kb on - strandat 2630.525 kb on - strandat 2631.118 kb on - strandat 2631.151 kb on + strandat 2631.151 kb on + strandat 2631.151 kb on + strandat 2631.151 kb on + strandat 2631.152 kb on - strandat 2631.152 kb on - strandat 2631.423 kb on + strand, within Xcc-8004.2719.1at 2631.424 kb on - strand, within Xcc-8004.2719.1at 2631.450 kb on - strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.466 kb on + strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.467 kb on - strand, within Xcc-8004.2719.1at 2631.733 kb on + strand, within Xcc-8004.2719.1at 2631.733 kb on + strand, within Xcc-8004.2719.1at 2631.733 kb on + strand, within Xcc-8004.2719.1at 2631.733 kb on + strand, within Xcc-8004.2719.1at 2631.733 kb on + strand, within Xcc-8004.2719.1at 2631.734 kb on - strand, within Xcc-8004.2719.1at 2631.734 kb on - strand, within Xcc-8004.2719.1at 2631.734 kb on - strand, within Xcc-8004.2719.1at 2631.734 kb on - strand, within Xcc-8004.2719.1at 2631.734 kb on - strand, within Xcc-8004.2719.1at 2631.734 kb on - strand, within Xcc-8004.2719.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,629,592 - Xcc-8004.2716.1 0.48 -0.7
2,629,844 + Xcc-8004.2716.1 0.73 -0.9
2,629,844 + Xcc-8004.2716.1 0.73 +1.3
2,629,844 + Xcc-8004.2716.1 0.73 -0.5
2,629,844 + Xcc-8004.2716.1 0.73 +0.3
2,629,844 + Xcc-8004.2716.1 0.73 +0.1
2,629,844 + Xcc-8004.2716.1 0.73 +0.5
2,629,844 + Xcc-8004.2716.1 0.73 +1.0
2,629,844 + Xcc-8004.2716.1 0.73 +1.2
2,629,844 + Xcc-8004.2716.1 0.73 +0.1
2,629,844 + Xcc-8004.2716.1 0.73 +0.6
2,629,844 + Xcc-8004.2716.1 0.73 -0.1
2,629,844 + Xcc-8004.2716.1 0.73 -0.2
2,629,844 + Xcc-8004.2716.1 0.73 -1.1
2,629,845 - Xcc-8004.2716.1 0.73 -0.6
2,629,845 - Xcc-8004.2716.1 0.73 +0.4
2,629,845 - Xcc-8004.2716.1 0.73 +0.3
2,629,845 - Xcc-8004.2716.1 0.73 +0.4
2,629,845 - Xcc-8004.2716.1 0.73 -2.1
2,629,845 - Xcc-8004.2716.1 0.73 +0.3
2,629,845 - Xcc-8004.2716.1 0.73 -0.7
2,629,845 - Xcc-8004.2716.1 0.73 +0.4
2,629,914 - Xcc-8004.2716.1 0.80 +0.1
2,629,928 + Xcc-8004.2716.1 0.82 +0.1
2,629,928 + Xcc-8004.2716.1 0.82 +3.1
2,630,458 - Xcc-8004.2717.1 0.89 +1.2
2,630,525 - +0.4
2,630,525 - +1.4
2,631,118 - -0.5
2,631,151 + +1.4
2,631,151 + -0.0
2,631,151 + +0.3
2,631,151 + -0.8
2,631,152 - -0.5
2,631,152 - -0.4
2,631,423 + Xcc-8004.2719.1 0.25 -0.8
2,631,424 - Xcc-8004.2719.1 0.25 +0.8
2,631,450 - Xcc-8004.2719.1 0.28 +0.1
2,631,466 + Xcc-8004.2719.1 0.29 +0.5
2,631,466 + Xcc-8004.2719.1 0.29 -0.7
2,631,466 + Xcc-8004.2719.1 0.29 -0.5
2,631,466 + Xcc-8004.2719.1 0.29 +0.3
2,631,466 + Xcc-8004.2719.1 0.29 +0.2
2,631,466 + Xcc-8004.2719.1 0.29 +2.5
2,631,466 + Xcc-8004.2719.1 0.29 -0.7
2,631,466 + Xcc-8004.2719.1 0.29 -0.9
2,631,466 + Xcc-8004.2719.1 0.29 +0.8
2,631,466 + Xcc-8004.2719.1 0.29 -0.4
2,631,466 + Xcc-8004.2719.1 0.29 -0.6
2,631,467 - Xcc-8004.2719.1 0.29 -1.8
2,631,467 - Xcc-8004.2719.1 0.29 +0.4
2,631,467 - Xcc-8004.2719.1 0.29 +0.4
2,631,467 - Xcc-8004.2719.1 0.29 -0.4
2,631,467 - Xcc-8004.2719.1 0.29 -0.1
2,631,467 - Xcc-8004.2719.1 0.29 +0.2
2,631,467 - Xcc-8004.2719.1 0.29 +0.1
2,631,467 - Xcc-8004.2719.1 0.29 -0.9
2,631,467 - Xcc-8004.2719.1 0.29 +2.1
2,631,467 - Xcc-8004.2719.1 0.29 -1.1
2,631,467 - Xcc-8004.2719.1 0.29 -2.1
2,631,467 - Xcc-8004.2719.1 0.29 +0.6
2,631,733 + Xcc-8004.2719.1 0.50 +1.0
2,631,733 + Xcc-8004.2719.1 0.50 +1.7
2,631,733 + Xcc-8004.2719.1 0.50 +0.9
2,631,733 + Xcc-8004.2719.1 0.50 +0.3
2,631,733 + Xcc-8004.2719.1 0.50 -1.2
2,631,734 - Xcc-8004.2719.1 0.50 -0.5
2,631,734 - Xcc-8004.2719.1 0.50 +0.0
2,631,734 - Xcc-8004.2719.1 0.50 +0.9
2,631,734 - Xcc-8004.2719.1 0.50 -1.5
2,631,734 - Xcc-8004.2719.1 0.50 -0.2
2,631,734 - Xcc-8004.2719.1 0.50 +0.5

Or see this region's nucleotide sequence