Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2716.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,628,244	+		Xcc-8004.2714.1	0.81	+0.0
2,628,244	+		Xcc-8004.2714.1	0.81	+0.7
2,628,245	-		Xcc-8004.2714.1	0.81	-0.8
2,628,245	-		Xcc-8004.2714.1	0.81	+0.2
2,628,245	-		Xcc-8004.2714.1	0.81	-0.6
2,628,349	+				-1.0
2,628,350	-				+1.7
2,628,410	+				-0.8
2,628,410	+				-0.1
2,628,411	-				-1.0
2,628,411	-				-0.9
2,628,411	-				+1.0
2,628,411	-				-0.8
2,628,412	+				-0.2
2,628,412	+				-0.2
2,628,412	+				+0.7
2,628,412	+				+0.1
2,628,412	+				+0.2
2,628,412	+				-2.5
2,628,412	+				+0.3
2,628,413	-				+1.4
2,628,413	-				-1.0
2,628,413	-				-0.1
2,628,413	-				-0.1
2,628,413	-				+0.7
2,628,413	-				+0.3
2,628,413	-				+0.7
2,628,451	+				-1.0
2,628,451	+				-0.7
2,628,451	+				-0.2
2,628,451	+				+0.1
2,628,451	+				+0.1
2,628,451	+				-0.7
2,628,452	-				-1.4
2,628,452	-				-0.6
2,628,452	-				+0.1
2,628,452	-				-2.8
2,628,452	-				-0.2
2,628,452	-				-1.3
2,628,452	-				-0.3
2,628,452	-				-0.0
2,628,545	+		Xcc-8004.2715.1	0.16	+0.3
2,628,545	+		Xcc-8004.2715.1	0.16	+0.8
2,628,545	+		Xcc-8004.2715.1	0.16	-1.2
2,628,546	-		Xcc-8004.2715.1	0.16	+0.2
2,628,734	+		Xcc-8004.2715.1	0.49	+0.9
2,628,735	-		Xcc-8004.2715.1	0.49	-0.0
2,628,735	-		Xcc-8004.2715.1	0.49	+0.4
2,628,951	+		Xcc-8004.2715.1	0.87	-0.8
2,628,951	+		Xcc-8004.2715.1	0.87	-0.9
2,628,952	-		Xcc-8004.2715.1	0.87	+0.0
2,628,952	-		Xcc-8004.2715.1	0.87	-1.3
2,628,954	-		Xcc-8004.2715.1	0.87	+1.4
2,628,954	-		Xcc-8004.2715.1	0.87	+0.2
2,629,193	+				+0.4
2,629,193	+				-0.3
2,629,193	+				+0.2
2,629,193	+				-0.1
2,629,194	-				+1.1
2,629,194	-				+0.4
2,629,194	-				+0.2
2,629,221	+		Xcc-8004.2716.1	0.11	-0.8
2,629,232	-		Xcc-8004.2716.1	0.12	-1.0
2,629,441	+		Xcc-8004.2716.1	0.33	+0.7
2,629,441	+		Xcc-8004.2716.1	0.33	+0.3
2,629,441	+		Xcc-8004.2716.1	0.33	-0.1
2,629,441	+		Xcc-8004.2716.1	0.33	+0.1
2,629,441	+		Xcc-8004.2716.1	0.33	-1.0
2,629,442	-		Xcc-8004.2716.1	0.33	-0.6
2,629,442	-		Xcc-8004.2716.1	0.33	-1.5
2,629,442	-		Xcc-8004.2716.1	0.33	-0.5
2,629,442	-		Xcc-8004.2716.1	0.33	-1.0
2,629,442	-		Xcc-8004.2716.1	0.33	-0.2
2,629,592	-		Xcc-8004.2716.1	0.48	-0.7
2,629,844	+		Xcc-8004.2716.1	0.73	-0.9
2,629,844	+		Xcc-8004.2716.1	0.73	+1.3
2,629,844	+		Xcc-8004.2716.1	0.73	-0.5
2,629,844	+		Xcc-8004.2716.1	0.73	+0.3
2,629,844	+		Xcc-8004.2716.1	0.73	+0.1
2,629,844	+		Xcc-8004.2716.1	0.73	+0.5
2,629,844	+		Xcc-8004.2716.1	0.73	+1.0
2,629,844	+		Xcc-8004.2716.1	0.73	+1.2
2,629,844	+		Xcc-8004.2716.1	0.73	+0.1
2,629,844	+		Xcc-8004.2716.1	0.73	+0.6
2,629,844	+		Xcc-8004.2716.1	0.73	-0.1
2,629,844	+		Xcc-8004.2716.1	0.73	-0.2
2,629,844	+		Xcc-8004.2716.1	0.73	-1.1
2,629,845	-		Xcc-8004.2716.1	0.73	-0.6
2,629,845	-		Xcc-8004.2716.1	0.73	+0.4
2,629,845	-		Xcc-8004.2716.1	0.73	+0.3
2,629,845	-		Xcc-8004.2716.1	0.73	+0.4
2,629,845	-		Xcc-8004.2716.1	0.73	-2.1
2,629,845	-		Xcc-8004.2716.1	0.73	+0.3
2,629,845	-		Xcc-8004.2716.1	0.73	-0.7
2,629,845	-		Xcc-8004.2716.1	0.73	+0.4
2,629,914	-		Xcc-8004.2716.1	0.80	+0.1
2,629,928	+		Xcc-8004.2716.1	0.82	+0.1
2,629,928	+		Xcc-8004.2716.1	0.82	+3.1
2,630,458	-		Xcc-8004.2717.1	0.89	+1.2
2,630,525	-				+0.4
2,630,525	-				+1.4