Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2699.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,610,226	+		Xcc-8004.2698.1	0.79	+0.8
2,610,351	+				-1.1
2,610,351	+				-1.1
2,610,434	+				+0.3
2,610,434	+				+0.7
2,610,434	+				+0.7
2,610,434	+				-0.0
2,610,434	+				+0.2
2,610,434	+				+0.6
2,610,434	+				+0.3
2,610,434	+				-0.9
2,610,434	+				+0.1
2,610,434	+				-1.2
2,610,435	-				-0.0
2,610,435	-				+0.1
2,610,435	-				+0.9
2,610,435	-				-1.2
2,610,435	-				+0.5
2,610,435	-				-1.2
2,610,435	-				+1.4
2,610,435	-				+0.2
2,610,469	+				+0.9
2,610,469	+				-0.0
2,610,469	+				-0.0
2,610,470	-				-1.2
2,610,495	+				-0.6
2,610,495	+				+0.9
2,610,495	+				+2.7
2,610,495	+				-0.2
2,610,495	+				-1.0
2,610,495	+				-0.9
2,610,495	+				-2.6
2,610,495	+				-1.3
2,610,496	-				+1.7
2,610,496	-				+1.7
2,610,496	-				-0.1
2,610,496	-				-0.9
2,610,496	-				+0.5
2,610,496	-				-1.0
2,610,538	+				+2.1
2,610,538	+				+1.2
2,610,538	+				-0.8
2,610,539	-				-1.7
2,610,567	+				+0.0
2,610,567	+				+0.4
2,610,567	+				-1.0
2,610,567	+				+0.4
2,610,568	-				-0.3
2,610,568	-				-1.8
2,610,568	-				-0.6
2,610,568	-				-0.8
2,610,568	-				-1.2
2,610,568	-				-0.6
2,610,568	-				-0.8
2,610,568	-				+0.8
2,610,632	+				-1.0
2,610,633	-				+0.7
2,610,633	-				+0.5
2,610,644	-				+0.7
2,610,644	-				+0.5
2,610,883	-				-1.0
2,610,883	-				-1.0
2,610,903	-				-0.1
2,610,938	-				+1.0
2,611,088	+				+1.7
2,611,088	+				+0.9
2,611,088	+				+0.7
2,611,089	-				-0.6
2,611,089	-				+0.5
2,611,089	-				+0.5
2,611,089	-				+0.2
2,611,152	+		Xcc-8004.2699.1	0.25	-1.6
2,611,152	+		Xcc-8004.2699.1	0.25	-1.5
2,611,152	+		Xcc-8004.2699.1	0.25	-1.8
2,611,152	+		Xcc-8004.2699.1	0.25	-1.8
2,611,152	+		Xcc-8004.2699.1	0.25	-1.3
2,611,152	+		Xcc-8004.2699.1	0.25	-0.8
2,611,152	+		Xcc-8004.2699.1	0.25	-1.0
2,611,152	+		Xcc-8004.2699.1	0.25	-0.6
2,611,152	+		Xcc-8004.2699.1	0.25	-1.1
2,611,152	+		Xcc-8004.2699.1	0.25	-1.0
2,611,152	+		Xcc-8004.2699.1	0.25	-1.8
2,611,152	+		Xcc-8004.2699.1	0.25	-1.9
2,611,152	+		Xcc-8004.2699.1	0.25	-0.8
2,611,152	+		Xcc-8004.2699.1	0.25	-1.5
2,611,152	+		Xcc-8004.2699.1	0.25	-0.0
2,611,152	+		Xcc-8004.2699.1	0.25	-0.4
2,611,152	+		Xcc-8004.2699.1	0.25	-1.6
2,611,152	+		Xcc-8004.2699.1	0.25	-1.1
2,611,152	+		Xcc-8004.2699.1	0.25	-0.4
2,611,152	+		Xcc-8004.2699.1	0.25	-1.8
2,611,153	-				-4.5
2,611,153	-				+0.1
2,611,153	-				-0.1
2,611,153	-				-1.1
2,611,153	-				-1.9
2,611,153	-				-1.4
2,611,153	-				-2.1
2,611,153	-				-0.5
2,611,153	-				-1.4
2,611,153	-				-1.4
2,611,153	-				-1.4
2,611,153	-				-1.2
2,611,153	-				-1.7
2,611,153	-				-0.5
2,611,153	-				-0.9
2,611,153	-				-1.4
2,611,153	-				-2.0
2,611,153	-				-1.6
2,611,218	+				-1.0
2,611,218	+				-2.8
2,611,372	+		Xcc-8004.2700.1	0.59	-1.0
2,611,372	+		Xcc-8004.2700.1	0.59	-0.3
2,611,372	+		Xcc-8004.2700.1	0.59	-0.6
2,611,372	+		Xcc-8004.2700.1	0.59	-2.2
2,611,372	+		Xcc-8004.2700.1	0.59	-1.4
2,611,372	+		Xcc-8004.2700.1	0.59	-1.4
2,611,372	+		Xcc-8004.2700.1	0.59	-1.0
2,611,372	+		Xcc-8004.2700.1	0.59	-1.4
2,611,372	+		Xcc-8004.2700.1	0.59	-0.2
2,611,372	+		Xcc-8004.2700.1	0.59	-0.2
2,611,373	-		Xcc-8004.2700.1	0.59	-0.2
2,611,373	-		Xcc-8004.2700.1	0.59	-1.1
2,611,384	+		Xcc-8004.2700.1	0.62	-1.2
2,611,384	+		Xcc-8004.2700.1	0.62	-0.8
2,611,385	-		Xcc-8004.2700.1	0.62	+0.3
2,611,385	-		Xcc-8004.2700.1	0.62	-0.4
2,611,385	-		Xcc-8004.2700.1	0.62	+0.9
2,611,386	+		Xcc-8004.2700.1	0.63	-1.6
2,611,386	+		Xcc-8004.2700.1	0.63	-0.8
2,611,386	+		Xcc-8004.2700.1	0.63	-1.1
2,611,386	+		Xcc-8004.2700.1	0.63	-0.2
2,611,386	+		Xcc-8004.2700.1	0.63	-1.8
2,611,386	+		Xcc-8004.2700.1	0.63	-2.3
2,611,386	+		Xcc-8004.2700.1	0.63	-2.6
2,611,386	+		Xcc-8004.2700.1	0.63	-2.4
2,611,386	+		Xcc-8004.2700.1	0.63	+0.1
2,611,387	-		Xcc-8004.2700.1	0.63	+0.2
2,611,387	-		Xcc-8004.2700.1	0.63	+0.5
2,611,387	-		Xcc-8004.2700.1	0.63	-1.2
2,611,387	-		Xcc-8004.2700.1	0.63	-0.3
2,611,387	-		Xcc-8004.2700.1	0.63	+0.9
2,611,387	-		Xcc-8004.2700.1	0.63	-2.7
2,611,393	+		Xcc-8004.2700.1	0.65	-1.1
2,611,394	-		Xcc-8004.2700.1	0.65	-1.2
2,611,402	+		Xcc-8004.2700.1	0.67	-1.0
2,611,402	+		Xcc-8004.2700.1	0.67	-1.5
2,611,403	-		Xcc-8004.2700.1	0.67	-0.6
2,611,403	-		Xcc-8004.2700.1	0.67	+0.7
2,611,673	+		Xcc-8004.2701.1	0.38	-0.8
2,611,673	+		Xcc-8004.2701.1	0.38	+0.1
2,611,673	+		Xcc-8004.2701.1	0.38	+1.0
2,611,673	+		Xcc-8004.2701.1	0.38	+1.1
2,611,674	-		Xcc-8004.2701.1	0.39	+1.0
2,611,674	-		Xcc-8004.2701.1	0.39	-1.9
2,611,746	-		Xcc-8004.2701.1	0.62	-0.6
2,612,102	-		Xcc-8004.2702.1	0.21	+0.3
2,612,102	-		Xcc-8004.2702.1	0.21	-0.1
2,612,158	+		Xcc-8004.2702.1	0.26	+0.4
2,612,158	+		Xcc-8004.2702.1	0.26	+0.4
2,612,159	-		Xcc-8004.2702.1	0.26	+1.1
2,612,159	-		Xcc-8004.2702.1	0.26	-1.2
2,612,191	+		Xcc-8004.2702.1	0.29	-0.6
2,612,191	+		Xcc-8004.2702.1	0.29	-0.8
2,612,192	-		Xcc-8004.2702.1	0.29	+0.3
2,612,192	-		Xcc-8004.2702.1	0.29	-1.6
2,612,192	-		Xcc-8004.2702.1	0.29	-0.5
2,612,192	-		Xcc-8004.2702.1	0.29	+0.9
2,612,192	-		Xcc-8004.2702.1	0.29	-0.2
2,612,293	+		Xcc-8004.2702.1	0.37	-1.4
2,612,293	+		Xcc-8004.2702.1	0.37	-1.2
2,612,335	+		Xcc-8004.2702.1	0.41	-1.8
2,612,335	+		Xcc-8004.2702.1	0.41	-0.8
2,612,335	+		Xcc-8004.2702.1	0.41	-0.7
2,612,335	+		Xcc-8004.2702.1	0.41	-0.4
2,612,335	+		Xcc-8004.2702.1	0.41	-0.7
2,612,335	+		Xcc-8004.2702.1	0.41	-0.6
2,612,335	+		Xcc-8004.2702.1	0.41	+0.2
2,612,335	+		Xcc-8004.2702.1	0.41	-0.9
2,612,335	+		Xcc-8004.2702.1	0.41	+2.8
2,612,336	-		Xcc-8004.2702.1	0.41	+0.8
2,612,336	-		Xcc-8004.2702.1	0.41	-0.2
2,612,336	-		Xcc-8004.2702.1	0.41	-0.5
2,612,336	-		Xcc-8004.2702.1	0.41	+0.6
2,612,336	-		Xcc-8004.2702.1	0.41	+0.6