Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2696.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,606,446	+		Xcc-8004.2695.1	0.54	+0.1
2,606,446	+		Xcc-8004.2695.1	0.54	+2.4
2,606,446	+		Xcc-8004.2695.1	0.54	+0.4
2,606,446	+		Xcc-8004.2695.1	0.54	+0.1
2,606,446	+		Xcc-8004.2695.1	0.54	+0.1
2,606,447	-		Xcc-8004.2695.1	0.54	+0.1
2,606,447	-		Xcc-8004.2695.1	0.54	+0.7
2,606,447	-		Xcc-8004.2695.1	0.54	+0.9
2,606,447	-		Xcc-8004.2695.1	0.54	-0.5
2,606,447	-		Xcc-8004.2695.1	0.54	-0.7
2,606,448	+		Xcc-8004.2695.1	0.54	+1.5
2,606,449	-		Xcc-8004.2695.1	0.54	+0.0
2,606,449	-		Xcc-8004.2695.1	0.54	-1.2
2,606,449	-		Xcc-8004.2695.1	0.54	-0.8
2,606,449	-		Xcc-8004.2695.1	0.54	+0.0
2,606,482	+		Xcc-8004.2695.1	0.56	-0.7
2,606,482	+		Xcc-8004.2695.1	0.56	-0.8
2,606,482	+		Xcc-8004.2695.1	0.56	-0.1
2,606,482	+		Xcc-8004.2695.1	0.56	+0.4
2,606,483	-		Xcc-8004.2695.1	0.56	-1.6
2,606,483	-		Xcc-8004.2695.1	0.56	+0.9
2,606,963	-		Xcc-8004.2695.1	0.83	+0.1
2,606,978	-		Xcc-8004.2695.1	0.84	+0.8
2,606,978	-		Xcc-8004.2695.1	0.84	+0.4
2,607,149	+				+0.6
2,607,223	+				+2.1
2,607,223	+				+0.8
2,607,223	+				-0.6
2,607,224	-				-0.1
2,607,224	-				+0.2
2,607,224	-				+0.6
2,607,224	-				+0.2
2,607,287	+				-1.3
2,607,288	-				+0.8
2,607,288	-				-1.5
2,607,288	-				-0.0
2,607,288	-				+0.4
2,607,407	+				+0.3
2,607,407	+				+0.6
2,607,407	+				-0.3
2,607,408	-				+0.3
2,607,408	-				-0.7
2,607,408	-				-1.4
2,607,494	-		Xcc-8004.2696.1	0.18	-0.7
2,607,494	-		Xcc-8004.2696.1	0.18	+0.1
2,607,637	+		Xcc-8004.2696.1	0.33	-0.6
2,607,637	+		Xcc-8004.2696.1	0.33	-0.2
2,607,637	+		Xcc-8004.2696.1	0.33	-0.2
2,607,637	+		Xcc-8004.2696.1	0.33	-0.4
2,607,637	+		Xcc-8004.2696.1	0.33	-0.5
2,607,638	-		Xcc-8004.2696.1	0.33	-0.4
2,607,638	-		Xcc-8004.2696.1	0.33	-1.0
2,607,638	-		Xcc-8004.2696.1	0.33	+0.8
2,607,638	-		Xcc-8004.2696.1	0.33	-0.6
2,607,638	-		Xcc-8004.2696.1	0.33	+0.3
2,607,638	-		Xcc-8004.2696.1	0.33	-1.7
2,607,638	-		Xcc-8004.2696.1	0.33	-1.0
2,607,759	-		Xcc-8004.2696.1	0.47	-1.2
2,607,875	-		Xcc-8004.2696.1	0.59	-0.8
2,607,875	-		Xcc-8004.2696.1	0.59	-0.3
2,607,875	-		Xcc-8004.2696.1	0.59	+2.1
2,607,875	-		Xcc-8004.2696.1	0.59	+0.8
2,607,875	-		Xcc-8004.2696.1	0.59	+1.5
2,607,875	-		Xcc-8004.2696.1	0.59	-0.6
2,607,875	-		Xcc-8004.2696.1	0.59	+1.0
2,607,875	-		Xcc-8004.2696.1	0.59	-1.2
2,607,925	+		Xcc-8004.2696.1	0.65	-0.2
2,607,925	+		Xcc-8004.2696.1	0.65	-0.2
2,607,925	+		Xcc-8004.2696.1	0.65	-0.0
2,607,925	+		Xcc-8004.2696.1	0.65	-1.3
2,607,925	+		Xcc-8004.2696.1	0.65	+0.4
2,607,925	+		Xcc-8004.2696.1	0.65	-0.4
2,607,925	+		Xcc-8004.2696.1	0.65	+0.6
2,607,925	+		Xcc-8004.2696.1	0.65	-0.2
2,607,925	+		Xcc-8004.2696.1	0.65	-1.8
2,607,925	+		Xcc-8004.2696.1	0.65	+0.2
2,607,925	+		Xcc-8004.2696.1	0.65	-0.3
2,607,925	+		Xcc-8004.2696.1	0.65	-0.8
2,607,926	-		Xcc-8004.2696.1	0.65	-1.1
2,607,926	-		Xcc-8004.2696.1	0.65	-0.2
2,607,926	-		Xcc-8004.2696.1	0.65	-1.0
2,607,967	-		Xcc-8004.2696.1	0.69	-0.2
2,607,982	+		Xcc-8004.2696.1	0.71	-0.0
2,607,982	+		Xcc-8004.2696.1	0.71	-0.6
2,607,982	+		Xcc-8004.2696.1	0.71	+0.3
2,607,982	+		Xcc-8004.2696.1	0.71	-1.6
2,607,982	+		Xcc-8004.2696.1	0.71	-0.2
2,607,983	-		Xcc-8004.2696.1	0.71	+0.7
2,607,983	-		Xcc-8004.2696.1	0.71	-0.5
2,607,983	-		Xcc-8004.2696.1	0.71	-2.2
2,608,041	-		Xcc-8004.2696.1	0.77	-0.9
2,608,060	+		Xcc-8004.2696.1	0.79	+0.2
2,608,060	+		Xcc-8004.2696.1	0.79	+0.5
2,608,060	+		Xcc-8004.2696.1	0.79	-1.0
2,608,060	+		Xcc-8004.2696.1	0.79	-0.1
2,608,060	+		Xcc-8004.2696.1	0.79	-0.2
2,608,060	+		Xcc-8004.2696.1	0.79	+0.1
2,608,060	+		Xcc-8004.2696.1	0.79	+0.6
2,608,060	+		Xcc-8004.2696.1	0.79	+1.1
2,608,060	+		Xcc-8004.2696.1	0.79	+0.1
2,608,060	+		Xcc-8004.2696.1	0.79	-0.3
2,608,061	-		Xcc-8004.2696.1	0.79	+1.1
2,608,061	-		Xcc-8004.2696.1	0.79	-0.2
2,608,061	-		Xcc-8004.2696.1	0.79	+1.8
2,608,090	+		Xcc-8004.2696.1	0.83	+0.8
2,608,090	+		Xcc-8004.2696.1	0.83	+0.1
2,608,090	+		Xcc-8004.2696.1	0.83	-0.3
2,608,091	-		Xcc-8004.2696.1	0.83	-1.6
2,608,091	-		Xcc-8004.2696.1	0.83	-1.0
2,608,150	+		Xcc-8004.2696.1	0.89	+0.3
2,608,150	+		Xcc-8004.2696.1	0.89	-0.3
2,608,150	+		Xcc-8004.2696.1	0.89	+0.4
2,608,150	+		Xcc-8004.2696.1	0.89	-0.5
2,608,150	+		Xcc-8004.2696.1	0.89	-2.4
2,608,150	+		Xcc-8004.2696.1	0.89	+0.6
2,608,151	-		Xcc-8004.2696.1	0.89	-1.0
2,608,151	-		Xcc-8004.2696.1	0.89	+1.0
2,608,151	-		Xcc-8004.2696.1	0.89	-0.9
2,608,151	-		Xcc-8004.2696.1	0.89	-1.0
2,608,151	-		Xcc-8004.2696.1	0.89	-0.6
2,608,283	+				-0.3
2,608,283	+				+0.6
2,608,283	+				-1.8
2,608,284	-				-0.3
2,608,284	-				-0.2
2,608,284	-				-1.0
2,608,330	+				-0.1
2,608,330	+				+0.3
2,608,330	+				+0.3
2,608,330	+				+1.6
2,608,330	+				-1.1
2,608,331	-				+0.3
2,608,389	+				+0.3
2,608,389	+				-0.7
2,608,390	-				+0.0
2,608,390	-				-0.8
2,608,390	-				-0.4
2,608,390	-				+0.3
2,608,390	-				+0.7
2,608,469	+				+1.1
2,608,470	-				-1.4
2,608,503	+		Xcc-8004.2697.1	0.11	+1.2
2,608,503	+		Xcc-8004.2697.1	0.11	+0.4
2,608,524	+		Xcc-8004.2697.1	0.13	+0.7
2,608,524	+		Xcc-8004.2697.1	0.13	+1.0
2,608,524	+		Xcc-8004.2697.1	0.13	-1.3
2,608,524	+		Xcc-8004.2697.1	0.13	+0.1
2,608,524	+		Xcc-8004.2697.1	0.13	+0.3
2,608,525	-		Xcc-8004.2697.1	0.13	-0.8
2,608,525	-		Xcc-8004.2697.1	0.13	-0.2
2,608,525	-		Xcc-8004.2697.1	0.13	-0.8
2,608,525	-		Xcc-8004.2697.1	0.13	+1.1
2,608,525	-		Xcc-8004.2697.1	0.13	-1.0
2,608,671	+		Xcc-8004.2697.1	0.27	-1.4
2,608,671	+		Xcc-8004.2697.1	0.27	-0.2
2,608,671	+		Xcc-8004.2697.1	0.27	+2.6
2,608,672	-		Xcc-8004.2697.1	0.27	+0.5
2,608,672	-		Xcc-8004.2697.1	0.27	-1.3
2,608,714	+		Xcc-8004.2697.1	0.31	-0.2
2,608,714	+		Xcc-8004.2697.1	0.31	-0.0
2,608,714	+		Xcc-8004.2697.1	0.31	-0.1
2,608,714	+		Xcc-8004.2697.1	0.31	-0.4
2,608,714	+		Xcc-8004.2697.1	0.31	+1.5
2,608,714	+		Xcc-8004.2697.1	0.31	-0.3
2,608,714	+		Xcc-8004.2697.1	0.31	-0.0
2,608,714	+		Xcc-8004.2697.1	0.31	+1.2
2,608,714	+		Xcc-8004.2697.1	0.31	-0.3
2,608,714	+		Xcc-8004.2697.1	0.31	+0.4
2,608,715	-		Xcc-8004.2697.1	0.31	+1.0
2,608,715	-		Xcc-8004.2697.1	0.31	-0.2
2,608,715	-		Xcc-8004.2697.1	0.31	-0.5
2,608,715	-		Xcc-8004.2697.1	0.31	-1.2
2,608,715	-		Xcc-8004.2697.1	0.31	+0.2
2,608,715	-		Xcc-8004.2697.1	0.31	+0.5
2,608,715	-		Xcc-8004.2697.1	0.31	+1.1
2,608,715	-		Xcc-8004.2697.1	0.31	+0.1
2,608,715	-		Xcc-8004.2697.1	0.31	-0.3
2,608,715	-		Xcc-8004.2697.1	0.31	-0.8
2,609,208	+		Xcc-8004.2697.1	0.78	-0.0
2,609,208	+		Xcc-8004.2697.1	0.78	-0.4
2,609,208	+		Xcc-8004.2697.1	0.78	-0.7
2,609,208	+		Xcc-8004.2697.1	0.78	+0.1
2,609,208	+		Xcc-8004.2697.1	0.78	-1.1
2,609,208	+		Xcc-8004.2697.1	0.78	-0.1
2,609,208	+		Xcc-8004.2697.1	0.78	+0.8
2,609,208	+		Xcc-8004.2697.1	0.78	+1.8
2,609,208	+		Xcc-8004.2697.1	0.78	+0.3
2,609,208	+		Xcc-8004.2697.1	0.78	-0.1
2,609,209	-		Xcc-8004.2697.1	0.78	-0.3
2,609,209	-		Xcc-8004.2697.1	0.78	+0.6
2,609,209	-		Xcc-8004.2697.1	0.78	-0.5
2,609,209	-		Xcc-8004.2697.1	0.78	-0.0
2,609,209	-		Xcc-8004.2697.1	0.78	+0.8
2,609,209	-		Xcc-8004.2697.1	0.78	+0.7
2,609,209	-		Xcc-8004.2697.1	0.78	+0.1
2,609,209	-		Xcc-8004.2697.1	0.78	-0.8
2,609,209	-		Xcc-8004.2697.1	0.78	+0.2
2,609,209	-		Xcc-8004.2697.1	0.78	+0.7
2,609,209	-		Xcc-8004.2697.1	0.78	+0.1
2,609,209	-		Xcc-8004.2697.1	0.78	-0.0
2,609,209	-		Xcc-8004.2697.1	0.78	+0.4
2,609,250	+		Xcc-8004.2697.1	0.82	-2.2
2,609,250	+		Xcc-8004.2697.1	0.82	-0.7