Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2661.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,563,376	+				-1.1
2,563,379	+				-2.0
2,563,379	+				-1.1
2,563,380	-				+0.2
2,563,521	-				-0.6
2,563,662	+				-0.4
2,563,663	-				-0.3
2,563,671	+				-0.7
2,563,671	+				+0.6
2,563,672	-				-0.7
2,563,672	-				-0.6
2,563,672	-				-0.3
2,563,677	+				+1.6
2,563,678	-				-0.1
2,563,678	-				-0.8
2,563,678	-				+0.6
2,563,807	-		Xcc-8004.2661.1	0.12	+0.3
2,563,807	-		Xcc-8004.2661.1	0.12	+0.3
2,563,807	-		Xcc-8004.2661.1	0.12	+1.0
2,563,884	+		Xcc-8004.2661.1	0.15	-1.8
2,563,885	-		Xcc-8004.2661.1	0.15	-0.6
2,563,966	-		Xcc-8004.2661.1	0.19	-3.0
2,564,214	+		Xcc-8004.2661.1	0.31	+0.7
2,564,214	+		Xcc-8004.2661.1	0.31	+0.9
2,564,214	+		Xcc-8004.2661.1	0.31	-0.5
2,564,215	-		Xcc-8004.2661.1	0.31	+0.3
2,564,215	-		Xcc-8004.2661.1	0.31	+0.6
2,564,215	-		Xcc-8004.2661.1	0.31	-2.1
2,564,215	-		Xcc-8004.2661.1	0.31	-0.0
2,564,268	+		Xcc-8004.2661.1	0.34	+0.7
2,564,295	+		Xcc-8004.2661.1	0.35	+0.3
2,564,295	+		Xcc-8004.2661.1	0.35	-0.1
2,564,448	+		Xcc-8004.2661.1	0.43	-0.0
2,564,527	+		Xcc-8004.2661.1	0.47	-2.1
2,564,530	-		Xcc-8004.2661.1	0.47	-0.7
2,564,721	+		Xcc-8004.2661.1	0.56	-1.1
2,564,722	-		Xcc-8004.2661.1	0.56	+0.1
2,564,722	-		Xcc-8004.2661.1	0.56	-0.7
2,564,730	+		Xcc-8004.2661.1	0.57	+0.1
2,564,730	+		Xcc-8004.2661.1	0.57	-0.9
2,564,731	-		Xcc-8004.2661.1	0.57	-0.7
2,564,733	+		Xcc-8004.2661.1	0.57	-0.0
2,564,733	+		Xcc-8004.2661.1	0.57	-1.2
2,564,734	-		Xcc-8004.2661.1	0.57	-2.5
2,564,734	-		Xcc-8004.2661.1	0.57	+0.8
2,564,904	+		Xcc-8004.2661.1	0.65	-1.4
2,564,976	+		Xcc-8004.2661.1	0.69	+0.4
2,564,977	-		Xcc-8004.2661.1	0.69	-1.3
2,564,977	-		Xcc-8004.2661.1	0.69	-0.8
2,565,033	+		Xcc-8004.2661.1	0.71	-0.1
2,565,033	+		Xcc-8004.2661.1	0.71	-0.9
2,565,033	+		Xcc-8004.2661.1	0.71	+0.0
2,565,102	+		Xcc-8004.2661.1	0.75	+0.8
2,565,102	+		Xcc-8004.2661.1	0.75	-0.2
2,565,102	+		Xcc-8004.2661.1	0.75	-1.4
2,565,102	+		Xcc-8004.2661.1	0.75	+1.0
2,565,103	-		Xcc-8004.2661.1	0.75	-0.0
2,565,103	-		Xcc-8004.2661.1	0.75	+0.6
2,565,103	-		Xcc-8004.2661.1	0.75	-0.3
2,565,123	+		Xcc-8004.2661.1	0.76	+0.6
2,565,123	+		Xcc-8004.2661.1	0.76	+0.5
2,565,123	+		Xcc-8004.2661.1	0.76	-0.9
2,565,124	-		Xcc-8004.2661.1	0.76	+0.3
2,565,124	-		Xcc-8004.2661.1	0.76	+1.0
2,565,124	-		Xcc-8004.2661.1	0.76	-0.9
2,565,124	-		Xcc-8004.2661.1	0.76	-0.5
2,565,124	-		Xcc-8004.2661.1	0.76	+0.2
2,565,124	-		Xcc-8004.2661.1	0.76	-0.1
2,565,216	+		Xcc-8004.2661.1	0.80	+0.2
2,565,217	-		Xcc-8004.2661.1	0.80	-0.6
2,565,217	-		Xcc-8004.2661.1	0.80	-0.3
2,565,316	-		Xcc-8004.2661.1	0.85	-1.1
2,565,621	+				-0.7
2,565,621	+				-0.7
2,565,621	+				-0.2
2,565,621	+				+1.2
2,565,621	+				+1.8
2,565,621	+				+1.5
2,565,622	-				+0.6
2,565,622	-				+0.5
2,565,622	-				-0.6
2,565,622	-				-2.4
2,565,622	-				+0.4
2,565,622	-				+0.5
2,565,622	-				+0.3
2,565,622	-				-0.1
2,565,622	-				-0.2
2,565,689	-				-0.2
2,565,689	-				-1.0
2,565,767	+				+0.3
2,565,768	-				+0.3
2,565,768	-				-1.3
2,565,813	+				-0.1
2,565,813	+				+0.5
2,565,813	+				-1.1
2,565,813	+				+0.9
2,565,813	+				-0.4
2,565,814	-				-1.8
2,565,814	-				+4.1
2,565,814	-				-1.1
2,565,814	-				-0.2
2,565,814	-				-0.9
2,565,814	-				+0.9
2,565,814	-				-0.2
2,565,814	-				+0.4
2,565,814	-				+0.1
2,565,820	+				-0.7
2,565,820	+				+0.6
2,565,820	+				-1.4
2,565,821	-				-1.4
2,565,821	-				+0.0
2,565,821	-				-0.5
2,565,821	-				+0.2
2,565,861	+				-0.1
2,565,861	+				-1.8
2,565,861	+				+0.2
2,565,862	-				+0.3
2,565,862	-				+0.0
2,565,862	-				-0.0
2,565,862	-				+0.3
2,565,862	-				-1.9
2,565,862	-				+0.9
2,565,862	-				-0.3
2,565,918	+				+0.6
2,565,918	+				-1.2
2,565,918	+				+0.0
2,565,918	+				-0.6
2,565,918	+				+0.4
2,565,918	+				+0.0
2,565,918	+				+0.0
2,565,918	+				-2.2
2,565,918	+				-1.0
2,565,919	-				+0.2
2,565,919	-				-1.1
2,565,919	-				-0.8
2,565,919	-				+1.2
2,565,919	-				-0.0
2,565,919	-				+1.0
2,565,919	-				-0.2
2,565,919	-				-0.6
2,565,919	-				-1.0
2,565,919	-				+0.4
2,565,919	-				-0.5
2,566,158	+		Xcc-8004.2662.1	0.58	-2.1
2,566,159	-		Xcc-8004.2662.1	0.58	+0.3
2,566,168	-		Xcc-8004.2662.1	0.60	-0.1
2,566,186	+		Xcc-8004.2662.1	0.64	-1.3
2,566,187	-		Xcc-8004.2662.1	0.65	-0.9
2,566,187	-		Xcc-8004.2662.1	0.65	-0.3
2,566,187	-		Xcc-8004.2662.1	0.65	+0.0
2,566,187	-		Xcc-8004.2662.1	0.65	+0.8
2,566,296	+				+0.5
2,566,297	-				-0.3
2,566,297	-				-0.2
2,566,342	+				-2.4
2,566,343	-				+1.7
2,566,406	+				+0.6
2,566,406	+				+0.3
2,566,406	+				+0.1
2,566,407	-				-0.1
2,566,407	-				+0.2
2,566,407	-				-0.7
2,566,407	-				-0.8
2,566,492	-		Xcc-8004.2663.1	0.22	+0.3
2,566,492	-		Xcc-8004.2663.1	0.22	-0.2
2,566,492	-		Xcc-8004.2663.1	0.22	-0.5
2,566,585	+		Xcc-8004.2663.1	0.51	-1.5
2,566,588	+		Xcc-8004.2663.1	0.52	-1.0
2,566,588	+		Xcc-8004.2663.1	0.52	-0.0