Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2623.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,530,332	-		Xcc-8004.2621.1	0.85	-1.1
2,530,337	+		Xcc-8004.2621.1	0.85	+0.2
2,530,337	+		Xcc-8004.2621.1	0.85	+0.0
2,530,337	+		Xcc-8004.2621.1	0.85	+0.2
2,530,337	+		Xcc-8004.2621.1	0.85	+0.1
2,530,338	-		Xcc-8004.2621.1	0.86	-1.0
2,530,361	+		Xcc-8004.2621.1	0.87	-0.8
2,530,361	+		Xcc-8004.2621.1	0.87	+0.3
2,530,361	+		Xcc-8004.2621.1	0.87	-1.2
2,530,361	+		Xcc-8004.2621.1	0.87	+0.1
2,530,361	+		Xcc-8004.2621.1	0.87	-0.3
2,530,361	+		Xcc-8004.2621.1	0.87	+0.7
2,530,361	+		Xcc-8004.2621.1	0.87	-2.7
2,530,361	+		Xcc-8004.2621.1	0.87	+0.4
2,530,361	+		Xcc-8004.2621.1	0.87	+0.7
2,530,361	+		Xcc-8004.2621.1	0.87	-0.5
2,530,361	+		Xcc-8004.2621.1	0.87	-1.6
2,530,361	+		Xcc-8004.2621.1	0.87	+0.2
2,530,361	+		Xcc-8004.2621.1	0.87	-0.1
2,530,361	+		Xcc-8004.2621.1	0.87	+0.1
2,530,361	+		Xcc-8004.2621.1	0.87	+0.3
2,530,361	+		Xcc-8004.2621.1	0.87	+0.2
2,530,361	+		Xcc-8004.2621.1	0.87	-0.4
2,530,361	+		Xcc-8004.2621.1	0.87	-0.2
2,530,361	+		Xcc-8004.2621.1	0.87	-0.2
2,530,361	+		Xcc-8004.2621.1	0.87	-0.1
2,530,361	+		Xcc-8004.2621.1	0.87	+0.8
2,530,361	+		Xcc-8004.2621.1	0.87	-0.1
2,530,361	+		Xcc-8004.2621.1	0.87	-0.2
2,530,362	-		Xcc-8004.2621.1	0.87	-0.6
2,530,362	-		Xcc-8004.2621.1	0.87	+0.4
2,530,362	-		Xcc-8004.2621.1	0.87	+0.8
2,530,362	-		Xcc-8004.2621.1	0.87	+0.1
2,530,362	-		Xcc-8004.2621.1	0.87	-0.0
2,530,362	-		Xcc-8004.2621.1	0.87	-0.8
2,530,362	-		Xcc-8004.2621.1	0.87	-1.8
2,530,362	-		Xcc-8004.2621.1	0.87	-0.0
2,530,362	-		Xcc-8004.2621.1	0.87	-0.9
2,530,362	-		Xcc-8004.2621.1	0.87	-1.2
2,530,362	-		Xcc-8004.2621.1	0.87	-1.3
2,530,362	-		Xcc-8004.2621.1	0.87	-0.6
2,530,362	-		Xcc-8004.2621.1	0.87	-0.2
2,530,362	-		Xcc-8004.2621.1	0.87	+1.0
2,530,362	-		Xcc-8004.2621.1	0.87	-0.3
2,530,362	-		Xcc-8004.2621.1	0.87	-1.1
2,530,362	-		Xcc-8004.2621.1	0.87	-1.4
2,530,362	-		Xcc-8004.2621.1	0.87	-0.2
2,530,362	-		Xcc-8004.2621.1	0.87	-0.8
2,530,362	-		Xcc-8004.2621.1	0.87	-0.6
2,530,362	-		Xcc-8004.2621.1	0.87	+0.1
2,530,362	-		Xcc-8004.2621.1	0.87	+0.7
2,530,362	-		Xcc-8004.2621.1	0.87	-1.2
2,530,595	+				+0.8
2,530,595	+				-0.2
2,530,595	+				+0.1
2,530,595	+				+0.2
2,530,595	+				+0.5
2,530,596	-				-1.5
2,530,596	-				+0.6
2,530,596	-				+0.6
2,530,662	+				+0.8
2,530,662	+				-0.8
2,530,663	-				-1.4
2,530,663	-				+0.1
2,530,663	-				-1.2
2,530,663	-				+0.3
2,530,663	-				+0.7
2,530,663	-				-0.0
2,530,663	-				+0.3
2,530,666	+				+0.7
2,530,666	+				-0.1
2,530,666	+				+0.1
2,530,666	+				+0.6
2,530,666	+				-0.3
2,530,666	+				-1.0
2,530,666	+				+0.9
2,530,666	+				-1.3
2,530,666	+				-0.7
2,530,666	+				+0.4
2,530,666	+				+0.6
2,530,666	+				+0.7
2,530,666	+				-0.9
2,530,666	+				+0.6
2,530,666	+				+0.6
2,530,666	+				-0.6
2,530,666	+				-0.9
2,530,667	-				-1.5
2,530,667	-				-0.4
2,530,667	-				-0.3
2,530,667	-				-1.7
2,530,667	-				+0.4
2,530,667	-				+0.3
2,530,667	-				+1.3
2,530,667	-				+0.6
2,530,667	-				+0.0
2,530,667	-				+0.0
2,530,667	-				-0.2
2,530,667	-				-2.7
2,530,667	-				-0.4
2,530,667	-				-0.5
2,530,667	-				+0.6
2,530,678	+				+0.6
2,530,678	+				+0.1
2,530,678	+				+0.1
2,530,678	+				+0.3
2,530,679	-				+1.9
2,530,679	-				-0.1
2,530,689	+				-1.7
2,530,689	+				+0.3
2,530,689	+				-0.9
2,530,689	+				-0.9
2,530,689	+				-0.5
2,530,689	+				-1.1
2,530,689	+				-0.7
2,530,689	+				+1.1
2,530,689	+				+0.5
2,530,689	+				-0.1
2,530,689	+				-0.0
2,530,689	+				+0.8
2,530,689	+				-1.9
2,530,689	+				-0.6
2,530,690	-				+0.9
2,530,690	-				-1.2
2,530,690	-				+0.1
2,530,690	-				+0.2
2,530,690	-				-0.0
2,530,690	-				-0.5
2,530,690	-				-0.9
2,530,690	-				-0.2
2,530,773	+				-0.0
2,530,773	+				+0.1
2,530,773	+				-0.3
2,530,773	+				+1.1
2,530,773	+				+0.8
2,530,774	-				-0.2
2,530,774	-				+0.1
2,530,813	+		Xcc-8004.2622.1	0.13	+0.3
2,530,813	+		Xcc-8004.2622.1	0.13	-0.2
2,530,813	+		Xcc-8004.2622.1	0.13	-0.9
2,530,813	+		Xcc-8004.2622.1	0.13	+1.0
2,530,813	+		Xcc-8004.2622.1	0.13	-0.6
2,530,813	+		Xcc-8004.2622.1	0.13	+0.6
2,530,813	+		Xcc-8004.2622.1	0.13	-0.5
2,530,813	+		Xcc-8004.2622.1	0.13	-0.2
2,530,813	+		Xcc-8004.2622.1	0.13	-0.1
2,530,814	-		Xcc-8004.2622.1	0.14	+0.4
2,530,814	-		Xcc-8004.2622.1	0.14	-0.2
2,530,814	-		Xcc-8004.2622.1	0.14	+1.7
2,530,814	-		Xcc-8004.2622.1	0.14	+0.8
2,530,814	-		Xcc-8004.2622.1	0.14	+1.5
2,530,814	-		Xcc-8004.2622.1	0.14	+0.8
2,530,814	-		Xcc-8004.2622.1	0.14	-1.0
2,530,814	-		Xcc-8004.2622.1	0.14	+0.0
2,530,814	-		Xcc-8004.2622.1	0.14	+1.4
2,530,814	-		Xcc-8004.2622.1	0.14	+1.3
2,530,814	-		Xcc-8004.2622.1	0.14	+1.6
2,530,876	+		Xcc-8004.2622.1	0.23	+1.1
2,530,877	-		Xcc-8004.2622.1	0.23	-0.1
2,530,877	-		Xcc-8004.2622.1	0.23	-0.2
2,530,877	-		Xcc-8004.2622.1	0.23	-0.8
2,530,992	+		Xcc-8004.2622.1	0.41	-1.9
2,530,992	+		Xcc-8004.2622.1	0.41	-0.6
2,530,992	+		Xcc-8004.2622.1	0.41	-0.0
2,530,992	+		Xcc-8004.2622.1	0.41	+1.4
2,530,992	+		Xcc-8004.2622.1	0.41	+2.5
2,530,993	-		Xcc-8004.2622.1	0.41	+0.2
2,530,993	-		Xcc-8004.2622.1	0.41	-1.2
2,530,993	-		Xcc-8004.2622.1	0.41	-0.2
2,531,025	+		Xcc-8004.2622.1	0.46	-1.2
2,531,026	-		Xcc-8004.2622.1	0.46	+0.6
2,531,026	-		Xcc-8004.2622.1	0.46	+0.7
2,531,026	-		Xcc-8004.2622.1	0.46	-0.5
2,531,026	-		Xcc-8004.2622.1	0.46	+0.3
2,531,026	-		Xcc-8004.2622.1	0.46	-0.2
2,531,026	-		Xcc-8004.2622.1	0.46	-1.1
2,531,026	-		Xcc-8004.2622.1	0.46	+0.8
2,531,086	+		Xcc-8004.2622.1	0.55	-0.9
2,531,086	+		Xcc-8004.2622.1	0.55	+0.1
2,531,086	+		Xcc-8004.2622.1	0.55	-0.4
2,531,086	+		Xcc-8004.2622.1	0.55	-1.0
2,531,086	+		Xcc-8004.2622.1	0.55	+2.3
2,531,086	+		Xcc-8004.2622.1	0.55	-2.2
2,531,087	-		Xcc-8004.2622.1	0.55	+0.2
2,531,087	-		Xcc-8004.2622.1	0.55	-1.4
2,531,087	-		Xcc-8004.2622.1	0.55	+2.1
2,531,087	-		Xcc-8004.2622.1	0.55	+0.6
2,531,087	-		Xcc-8004.2622.1	0.55	-2.2
2,531,087	-		Xcc-8004.2622.1	0.55	-1.4
2,531,087	-		Xcc-8004.2622.1	0.55	+0.0
2,531,087	-		Xcc-8004.2622.1	0.55	-0.4
2,531,087	-		Xcc-8004.2622.1	0.55	+1.6
2,531,098	+		Xcc-8004.2622.1	0.57	+0.2
2,531,099	-		Xcc-8004.2622.1	0.57	-0.6
2,531,210	+		Xcc-8004.2622.1	0.74	+0.1
2,531,211	-		Xcc-8004.2622.1	0.75	-0.6
2,531,278	+		Xcc-8004.2622.1	0.85	+0.1
2,531,279	-		Xcc-8004.2622.1	0.85	+0.5
2,531,279	-		Xcc-8004.2622.1	0.85	+0.4
2,531,279	-		Xcc-8004.2622.1	0.85	+0.1
2,531,279	-		Xcc-8004.2622.1	0.85	+0.1
2,531,279	-		Xcc-8004.2622.1	0.85	-0.3
2,531,279	-		Xcc-8004.2622.1	0.85	-1.6
2,531,307	+		Xcc-8004.2622.1	0.89	+0.3
2,531,308	-		Xcc-8004.2622.1	0.89	+1.1
2,531,308	-		Xcc-8004.2622.1	0.89	+0.1
2,531,317	+				-1.6
2,531,317	+				+0.7
2,531,317	+				+2.1
2,531,317	+				-0.2
2,531,317	+				+0.2
2,531,317	+				-0.2
2,531,317	+				+1.1
2,531,317	+				+0.3
2,531,317	+				-1.4
2,531,317	+				-0.8
2,531,317	+				+0.9
2,531,317	+				-0.1
2,531,317	+				-0.9
2,531,317	+				-0.7
2,531,317	+				+0.1
2,531,317	+				-0.7
2,531,317	+				+0.7
2,531,318	-				-0.6
2,531,318	-				+0.3
2,531,318	-				-1.5
2,531,318	-				+0.1
2,531,318	-				+0.6
2,531,318	-				+0.2
2,531,318	-				-0.5
2,531,318	-				-0.4
2,531,318	-				+0.8
2,531,318	-				-1.6
2,531,318	-				-0.9
2,531,318	-				+0.8
2,531,318	-				+0.9
2,531,318	-				+0.6
2,531,318	-				+0.3
2,531,318	-				+0.7
2,531,318	-				+1.0
2,531,318	-				+0.1
2,531,318	-				-0.9
2,531,318	-				-0.4
2,531,318	-				+1.6
2,531,318	-				-0.7
2,531,318	-				+0.8
2,531,318	-				+0.1
2,531,318	-				-1.6
2,531,318	-				-0.2
2,531,318	-				-0.0
2,531,318	-				+0.5
2,531,318	-				-0.4
2,531,318	-				+0.1
2,531,318	-				-0.6
2,531,318	-				+0.9
2,531,318	-				-0.5
2,531,318	-				+1.6
2,531,318	-				-0.1
2,531,323	+				-1.3
2,531,323	+				+0.3
2,531,323	+				-0.8
2,531,323	+				-0.2
2,531,323	+				+0.2
2,531,323	+				-0.2
2,531,324	-				+0.4
2,531,324	-				+0.0
2,531,324	-				+0.2
2,531,324	-				+1.5
2,531,324	-				-0.4
2,531,326	+				-0.0
2,531,326	+				+0.8
2,531,326	+				+0.1
2,531,326	+				-1.4
2,531,327	-				+1.3
2,531,327	-				+0.1
2,531,327	-				-0.7
2,531,327	-				-1.0
2,531,327	-				-0.2
2,531,327	-				-1.4
2,531,327	-				-1.3
2,531,327	-				-0.9
2,531,362	+				-0.3
2,531,362	+				+1.6
2,531,362	+				+0.7
2,531,363	-				+0.4
2,531,363	-				+0.4
2,531,363	-				+0.1
2,531,407	+		Xcc-8004.2623.1	0.18	-1.0
2,531,407	+		Xcc-8004.2623.1	0.18	-1.2
2,531,407	+		Xcc-8004.2623.1	0.18	+0.4
2,531,407	+		Xcc-8004.2623.1	0.18	+2.6
2,531,407	+		Xcc-8004.2623.1	0.18	+1.6
2,531,407	+		Xcc-8004.2623.1	0.18	+1.8
2,531,408	-		Xcc-8004.2623.1	0.18	-0.2
2,531,408	-		Xcc-8004.2623.1	0.18	+0.4
2,531,408	-		Xcc-8004.2623.1	0.18	+2.1
2,531,408	-		Xcc-8004.2623.1	0.18	-0.9
2,531,408	-		Xcc-8004.2623.1	0.18	+0.0
2,531,408	-		Xcc-8004.2623.1	0.18	-1.9
2,531,408	-		Xcc-8004.2623.1	0.18	-0.6
2,531,408	-		Xcc-8004.2623.1	0.18	-0.2
2,531,408	-		Xcc-8004.2623.1	0.18	-0.2
2,531,408	-		Xcc-8004.2623.1	0.18	+0.2
2,531,408	-		Xcc-8004.2623.1	0.18	+0.5
2,531,408	-		Xcc-8004.2623.1	0.18	-1.6
2,531,412	+		Xcc-8004.2623.1	0.19	+0.2
2,531,412	+		Xcc-8004.2623.1	0.19	+0.1
2,531,413	-		Xcc-8004.2623.1	0.19	-0.2
2,531,413	-		Xcc-8004.2623.1	0.19	+0.6
2,531,413	-		Xcc-8004.2623.1	0.19	-0.7
2,531,450	+		Xcc-8004.2623.1	0.27	-1.0
2,531,519	+		Xcc-8004.2623.1	0.42	-0.1
2,531,519	+		Xcc-8004.2623.1	0.42	-1.2
2,531,519	+		Xcc-8004.2623.1	0.42	-0.9
2,531,519	+		Xcc-8004.2623.1	0.42	-1.9
2,531,520	-		Xcc-8004.2623.1	0.42	-0.7
2,531,520	-		Xcc-8004.2623.1	0.42	-0.2
2,531,520	-		Xcc-8004.2623.1	0.42	-1.2
2,531,520	-		Xcc-8004.2623.1	0.42	-1.0
2,531,607	+		Xcc-8004.2623.1	0.61	+1.8
2,531,778	+				+1.1
2,531,827	+				+0.6
2,531,827	+				-0.8
2,531,828	-				-0.1
2,531,828	-				+0.4
2,531,853	-				-1.0
2,532,060	-		Xcc-8004.2625.1	0.86	+0.1
2,532,072	+				+2.1
2,532,072	+				+1.6
2,532,073	-				+1.4
2,532,073	-				-0.7
2,532,073	-				+0.9
2,532,073	-				-0.0
2,532,073	-				+1.6
2,532,117	+				-0.2
2,532,206	-		Xcc-8004.2626.1	0.13	+0.4
2,532,391	-		Xcc-8004.2626.1	0.30	-0.1
2,532,416	+		Xcc-8004.2626.1	0.33	-1.2
2,532,451	+		Xcc-8004.2626.1	0.36	+1.0
2,532,451	+		Xcc-8004.2626.1	0.36	+0.8
2,532,564	+		Xcc-8004.2626.1	0.47	+1.0
2,532,565	-		Xcc-8004.2626.1	0.47	-0.0
2,532,607	+		Xcc-8004.2626.1	0.51	+0.4
2,532,608	-		Xcc-8004.2626.1	0.51	+0.3
2,532,611	+		Xcc-8004.2626.1	0.51	+0.8
2,532,612	-		Xcc-8004.2626.1	0.52	-0.4
2,532,642	-		Xcc-8004.2626.1	0.54	-0.0
2,532,682	-		Xcc-8004.2626.1	0.58	-1.7
2,532,685	+		Xcc-8004.2626.1	0.59	-0.1
2,532,686	-		Xcc-8004.2626.1	0.59	+3.1