Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.245.1 and Xcc-8004.247.1 are separated by 172 nucleotides Xcc-8004.247.1 and Xcc-8004.248.1 are separated by 287 nucleotides Xcc-8004.248.1 and Xcc-8004.249.1 overlap by 11 nucleotides
Xcc-8004.245.1: Xcc-8004.245.1 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 240,872 to 241,714
Xcc-8004.245.1
Xcc-8004.247.1: Xcc-8004.247.1 - Glutamine synthetase type I (EC 6.3.1.2), at 241,887 to 243,296
Xcc-8004.247.1
Xcc-8004.248.1: Xcc-8004.248.1 - Nitrogen regulatory protein P-II, at 243,584 to 243,922
Xcc-8004.248.1
Xcc-8004.249.1: Xcc-8004.249.1 - Ammonium transporter, at 243,912 to 245,387
Xcc-8004.249.1
Position (kb) 241
242
243
244 Strain fitness (log2 ratio) -1
0
1
2 at 241.699 kb on + strand at 241.699 kb on + strand at 241.700 kb on - strand at 241.744 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.845 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 243.401 kb on + strand at 243.401 kb on + strand at 243.402 kb on - strand at 243.402 kb on - strand at 243.402 kb on - strand at 243.402 kb on - strand at 243.402 kb on - strand at 243.402 kb on - strand at 243.577 kb on + strand at 243.578 kb on - strand at 243.665 kb on - strand, within Xcc-8004.248.1 at 243.719 kb on + strand, within Xcc-8004.248.1 at 243.720 kb on - strand, within Xcc-8004.248.1 at 243.720 kb on - strand, within Xcc-8004.248.1 at 243.734 kb on + strand, within Xcc-8004.248.1 at 243.734 kb on + strand, within Xcc-8004.248.1 at 243.734 kb on + strand, within Xcc-8004.248.1 at 243.734 kb on + strand, within Xcc-8004.248.1 at 243.734 kb on + strand, within Xcc-8004.248.1 at 243.735 kb on - strand, within Xcc-8004.248.1 at 243.735 kb on - strand, within Xcc-8004.248.1 at 243.735 kb on - strand, within Xcc-8004.248.1 at 243.735 kb on - strand, within Xcc-8004.248.1 at 243.735 kb on - strand, within Xcc-8004.248.1 at 243.887 kb on - strand, within Xcc-8004.248.1 at 243.944 kb on + strand at 243.945 kb on - strand at 243.945 kb on - strand at 243.984 kb on + strand at 243.985 kb on - strand at 243.985 kb on - strand at 243.985 kb on - strand at 244.242 kb on + strand, within Xcc-8004.249.1 at 244.242 kb on + strand, within Xcc-8004.249.1 at 244.242 kb on + strand, within Xcc-8004.249.1 at 244.242 kb on + strand, within Xcc-8004.249.1 at 244.242 kb on + strand, within Xcc-8004.249.1 at 244.242 kb on + strand, within Xcc-8004.249.1 at 244.242 kb on + strand, within Xcc-8004.249.1 at 244.243 kb on - strand, within Xcc-8004.249.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 241,699 + -0.4 241,699 + +0.2 241,700 - +0.1 241,744 + -0.1 241,842 + +0.3 241,842 + -0.2 241,842 + -0.5 241,842 + +0.2 241,842 + -1.0 241,842 + -0.4 241,842 + +1.1 241,845 + -1.2 241,863 + -1.0 241,863 + +0.8 241,863 + -1.5 241,863 + -0.1 241,863 + -0.1 241,863 + -0.5 241,863 + +0.9 241,863 + -1.3 241,863 + +0.5 241,863 + +0.5 241,863 + -0.6 241,863 + -0.9 243,401 + -1.6 243,401 + +0.8 243,402 - -0.6 243,402 - -0.1 243,402 - -1.1 243,402 - +1.1 243,402 - +1.1 243,402 - +0.8 243,577 + -0.2 243,578 - +1.0 243,665 - Xcc-8004.248.1 0.24 -0.7 243,719 + Xcc-8004.248.1 0.40 -1.4 243,720 - Xcc-8004.248.1 0.40 -1.6 243,720 - Xcc-8004.248.1 0.40 +0.6 243,734 + Xcc-8004.248.1 0.44 -0.3 243,734 + Xcc-8004.248.1 0.44 +0.8 243,734 + Xcc-8004.248.1 0.44 -0.7 243,734 + Xcc-8004.248.1 0.44 +0.4 243,734 + Xcc-8004.248.1 0.44 -1.3 243,735 - Xcc-8004.248.1 0.45 +0.1 243,735 - Xcc-8004.248.1 0.45 -1.1 243,735 - Xcc-8004.248.1 0.45 +0.0 243,735 - Xcc-8004.248.1 0.45 -0.4 243,735 - Xcc-8004.248.1 0.45 -0.1 243,887 - Xcc-8004.248.1 0.89 -0.7 243,944 + -0.4 243,945 - -0.9 243,945 - -0.9 243,984 + -0.1 243,985 - +0.3 243,985 - -0.6 243,985 - -0.3 244,242 + Xcc-8004.249.1 0.22 -1.3 244,242 + Xcc-8004.249.1 0.22 -0.2 244,242 + Xcc-8004.249.1 0.22 +2.0 244,242 + Xcc-8004.249.1 0.22 +0.1 244,242 + Xcc-8004.249.1 0.22 -1.6 244,242 + Xcc-8004.249.1 0.22 -0.3 244,242 + Xcc-8004.249.1 0.22 +0.0 244,243 - Xcc-8004.249.1 0.22 -0.6
Or see this region's nucleotide sequence