Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.244.1 and Xcc-8004.245.1 are separated by 90 nucleotides Xcc-8004.245.1 and Xcc-8004.247.1 are separated by 172 nucleotides
Xcc-8004.244.1: Xcc-8004.244.1 - FIG01209881: hypothetical protein, at 239,957 to 240,781
Xcc-8004.244.1
Xcc-8004.245.1: Xcc-8004.245.1 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 240,872 to 241,714
Xcc-8004.245.1
Xcc-8004.247.1: Xcc-8004.247.1 - Glutamine synthetase type I (EC 6.3.1.2), at 241,887 to 243,296
Xcc-8004.247.1
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 239.895 kb on - strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.946 kb on - strand at 239.946 kb on - strand at 239.946 kb on - strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 240.210 kb on - strand, within Xcc-8004.244.1 at 240.466 kb on - strand, within Xcc-8004.244.1 at 240.466 kb on - strand, within Xcc-8004.244.1 at 240.543 kb on - strand, within Xcc-8004.244.1 at 240.617 kb on + strand, within Xcc-8004.244.1 at 240.618 kb on - strand, within Xcc-8004.244.1 at 240.764 kb on + strand at 240.765 kb on - strand at 241.699 kb on + strand at 241.699 kb on + strand at 241.700 kb on - strand at 241.744 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.845 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 239,895 - -0.9 239,938 + +1.3 239,938 + -0.8 239,938 + -1.0 239,938 + -0.1 239,938 + +0.1 239,938 + +0.4 239,939 - -1.5 239,939 - -1.3 239,939 - +0.6 239,939 - +0.8 239,939 - +0.2 239,946 - +0.3 239,946 - +0.0 239,946 - -0.1 239,991 + +0.2 239,991 + -3.0 239,991 + +0.4 239,991 + -0.5 239,991 + -0.9 239,992 - +1.0 239,992 - -0.4 239,992 - -3.1 239,992 - -0.6 239,992 - -0.1 239,992 - +0.6 240,210 - Xcc-8004.244.1 0.31 -1.1 240,466 - Xcc-8004.244.1 0.62 -0.8 240,466 - Xcc-8004.244.1 0.62 -0.9 240,543 - Xcc-8004.244.1 0.71 -0.2 240,617 + Xcc-8004.244.1 0.80 -1.3 240,618 - Xcc-8004.244.1 0.80 -1.0 240,764 + -1.1 240,765 - +1.4 241,699 + -0.4 241,699 + +0.2 241,700 - +0.1 241,744 + -0.1 241,842 + +0.3 241,842 + -0.2 241,842 + -0.5 241,842 + +0.2 241,842 + -1.0 241,842 + -0.4 241,842 + +1.1 241,845 + -1.2 241,863 + -1.0 241,863 + +0.8 241,863 + -1.5 241,863 + -0.1 241,863 + -0.1 241,863 + -0.5 241,863 + +0.9 241,863 + -1.3 241,863 + +0.5 241,863 + +0.5 241,863 + -0.6 241,863 + -0.9
Or see this region's nucleotide sequence