Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.240.1 and Xcc-8004.241.1 are separated by 25 nucleotides Xcc-8004.241.1 and Xcc-8004.242.1 are separated by 95 nucleotides Xcc-8004.242.1 and Xcc-8004.244.1 are separated by 201 nucleotides
Xcc-8004.240.1: Xcc-8004.240.1 - Phospholipid-binding protein, at 238,445 to 239,056
Xcc-8004.240.1
Xcc-8004.241.1: Xcc-8004.241.1 - hypothetical protein, at 239,082 to 239,279
Xcc-8004.241.1
Xcc-8004.242.1: Xcc-8004.242.1 - hypothetical protein, at 239,375 to 239,755
Xcc-8004.242.1
Xcc-8004.244.1: Xcc-8004.244.1 - FIG01209881: hypothetical protein, at 239,957 to 240,781
Xcc-8004.244.1
Position (kb) 239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 238.444 kb on + strand at 238.444 kb on + strand at 238.444 kb on + strand at 238.444 kb on + strand at 238.444 kb on + strand at 238.444 kb on + strand at 238.444 kb on + strand at 238.444 kb on + strand at 238.444 kb on + strand at 238.445 kb on - strand at 238.445 kb on - strand at 238.445 kb on - strand at 238.445 kb on - strand at 238.445 kb on - strand at 238.445 kb on - strand at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.644 kb on + strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.645 kb on - strand, within Xcc-8004.240.1 at 238.699 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.811 kb on + strand, within Xcc-8004.240.1 at 238.812 kb on - strand, within Xcc-8004.240.1 at 238.812 kb on - strand, within Xcc-8004.240.1 at 238.812 kb on - strand, within Xcc-8004.240.1 at 238.812 kb on - strand, within Xcc-8004.240.1 at 238.812 kb on - strand, within Xcc-8004.240.1 at 238.853 kb on + strand, within Xcc-8004.240.1 at 238.853 kb on + strand, within Xcc-8004.240.1 at 238.853 kb on + strand, within Xcc-8004.240.1 at 238.853 kb on + strand, within Xcc-8004.240.1 at 238.853 kb on + strand, within Xcc-8004.240.1 at 238.853 kb on + strand, within Xcc-8004.240.1 at 238.853 kb on + strand, within Xcc-8004.240.1 at 238.853 kb on + strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.854 kb on - strand, within Xcc-8004.240.1 at 238.907 kb on + strand, within Xcc-8004.240.1 at 238.907 kb on + strand, within Xcc-8004.240.1 at 238.908 kb on - strand, within Xcc-8004.240.1 at 238.908 kb on - strand, within Xcc-8004.240.1 at 238.908 kb on - strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.978 kb on - strand, within Xcc-8004.240.1 at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.054 kb on + strand at 239.170 kb on - strand, within Xcc-8004.241.1 at 239.170 kb on - strand, within Xcc-8004.241.1 at 239.170 kb on - strand, within Xcc-8004.241.1 at 239.170 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.303 kb on + strand at 239.303 kb on + strand at 239.303 kb on + strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.443 kb on + strand, within Xcc-8004.242.1 at 239.443 kb on + strand, within Xcc-8004.242.1 at 239.444 kb on - strand, within Xcc-8004.242.1 at 239.444 kb on - strand, within Xcc-8004.242.1 at 239.531 kb on + strand, within Xcc-8004.242.1 at 239.531 kb on + strand, within Xcc-8004.242.1 at 239.532 kb on - strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.626 kb on - strand, within Xcc-8004.242.1 at 239.753 kb on + strand at 239.753 kb on + strand at 239.754 kb on - strand at 239.783 kb on + strand at 239.783 kb on + strand at 239.783 kb on + strand at 239.783 kb on + strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.850 kb on + strand at 239.850 kb on + strand at 239.850 kb on + strand at 239.851 kb on - strand at 239.851 kb on - strand at 239.895 kb on - strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.946 kb on - strand at 239.946 kb on - strand at 239.946 kb on - strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 240.210 kb on - strand, within Xcc-8004.244.1 at 240.466 kb on - strand, within Xcc-8004.244.1 at 240.466 kb on - strand, within Xcc-8004.244.1 at 240.543 kb on - strand, within Xcc-8004.244.1 at 240.617 kb on + strand, within Xcc-8004.244.1 at 240.618 kb on - strand, within Xcc-8004.244.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 238,444 + -0.2 238,444 + -0.4 238,444 + +0.1 238,444 + -0.7 238,444 + -0.7 238,444 + -0.6 238,444 + +0.8 238,444 + +0.6 238,444 + +0.4 238,445 - +0.0 238,445 - +1.4 238,445 - -1.9 238,445 - -0.2 238,445 - +1.7 238,445 - +0.3 238,644 + Xcc-8004.240.1 0.33 -0.5 238,644 + Xcc-8004.240.1 0.33 -0.5 238,644 + Xcc-8004.240.1 0.33 -0.0 238,644 + Xcc-8004.240.1 0.33 -0.6 238,644 + Xcc-8004.240.1 0.33 -1.3 238,644 + Xcc-8004.240.1 0.33 -0.2 238,644 + Xcc-8004.240.1 0.33 +0.2 238,644 + Xcc-8004.240.1 0.33 +0.0 238,644 + Xcc-8004.240.1 0.33 +1.6 238,644 + Xcc-8004.240.1 0.33 -1.0 238,644 + Xcc-8004.240.1 0.33 +0.6 238,644 + Xcc-8004.240.1 0.33 -0.4 238,644 + Xcc-8004.240.1 0.33 +1.4 238,644 + Xcc-8004.240.1 0.33 -0.7 238,644 + Xcc-8004.240.1 0.33 -2.5 238,644 + Xcc-8004.240.1 0.33 +0.6 238,644 + Xcc-8004.240.1 0.33 -0.1 238,644 + Xcc-8004.240.1 0.33 +0.3 238,644 + Xcc-8004.240.1 0.33 +0.3 238,644 + Xcc-8004.240.1 0.33 -0.0 238,645 - Xcc-8004.240.1 0.33 -0.5 238,645 - Xcc-8004.240.1 0.33 -0.7 238,645 - Xcc-8004.240.1 0.33 +1.1 238,645 - Xcc-8004.240.1 0.33 -0.0 238,645 - Xcc-8004.240.1 0.33 -0.3 238,645 - Xcc-8004.240.1 0.33 -0.1 238,645 - Xcc-8004.240.1 0.33 +2.0 238,645 - Xcc-8004.240.1 0.33 -1.0 238,645 - Xcc-8004.240.1 0.33 -1.7 238,645 - Xcc-8004.240.1 0.33 +1.1 238,645 - Xcc-8004.240.1 0.33 -0.1 238,645 - Xcc-8004.240.1 0.33 +0.3 238,645 - Xcc-8004.240.1 0.33 +0.5 238,645 - Xcc-8004.240.1 0.33 +0.4 238,645 - Xcc-8004.240.1 0.33 +0.6 238,645 - Xcc-8004.240.1 0.33 +0.2 238,699 + Xcc-8004.240.1 0.42 -1.0 238,811 + Xcc-8004.240.1 0.60 -1.7 238,811 + Xcc-8004.240.1 0.60 -0.3 238,811 + Xcc-8004.240.1 0.60 -0.1 238,811 + Xcc-8004.240.1 0.60 +0.4 238,811 + Xcc-8004.240.1 0.60 -0.6 238,811 + Xcc-8004.240.1 0.60 -1.0 238,811 + Xcc-8004.240.1 0.60 +0.9 238,811 + Xcc-8004.240.1 0.60 -0.1 238,811 + Xcc-8004.240.1 0.60 +0.2 238,812 - Xcc-8004.240.1 0.60 -0.1 238,812 - Xcc-8004.240.1 0.60 +0.2 238,812 - Xcc-8004.240.1 0.60 -0.4 238,812 - Xcc-8004.240.1 0.60 -1.0 238,812 - Xcc-8004.240.1 0.60 -0.1 238,853 + Xcc-8004.240.1 0.67 -0.2 238,853 + Xcc-8004.240.1 0.67 +0.1 238,853 + Xcc-8004.240.1 0.67 -2.0 238,853 + Xcc-8004.240.1 0.67 +1.4 238,853 + Xcc-8004.240.1 0.67 -0.2 238,853 + Xcc-8004.240.1 0.67 +0.2 238,853 + Xcc-8004.240.1 0.67 +0.3 238,853 + Xcc-8004.240.1 0.67 +0.2 238,854 - Xcc-8004.240.1 0.67 +1.4 238,854 - Xcc-8004.240.1 0.67 +1.2 238,854 - Xcc-8004.240.1 0.67 +0.3 238,854 - Xcc-8004.240.1 0.67 -1.2 238,854 - Xcc-8004.240.1 0.67 +3.0 238,854 - Xcc-8004.240.1 0.67 -0.2 238,854 - Xcc-8004.240.1 0.67 -0.3 238,854 - Xcc-8004.240.1 0.67 +0.3 238,854 - Xcc-8004.240.1 0.67 +0.3 238,854 - Xcc-8004.240.1 0.67 -1.4 238,854 - Xcc-8004.240.1 0.67 +0.2 238,854 - Xcc-8004.240.1 0.67 -0.3 238,907 + Xcc-8004.240.1 0.75 +0.3 238,907 + Xcc-8004.240.1 0.75 -1.0 238,908 - Xcc-8004.240.1 0.76 +0.5 238,908 - Xcc-8004.240.1 0.76 +0.4 238,908 - Xcc-8004.240.1 0.76 -1.4 238,977 + Xcc-8004.240.1 0.87 +0.4 238,977 + Xcc-8004.240.1 0.87 +0.4 238,977 + Xcc-8004.240.1 0.87 -0.4 238,977 + Xcc-8004.240.1 0.87 -0.4 238,977 + Xcc-8004.240.1 0.87 -1.0 238,977 + Xcc-8004.240.1 0.87 -0.6 238,978 - Xcc-8004.240.1 0.87 +0.9 239,002 - +0.2 239,002 - -0.5 239,002 - -0.5 239,002 - -1.0 239,002 - -0.2 239,002 - -1.4 239,002 - +0.4 239,002 - +1.4 239,002 - -0.8 239,030 + +0.7 239,030 + -0.2 239,030 + +0.3 239,030 + +0.2 239,030 + -0.2 239,030 + +1.0 239,030 + -0.4 239,030 + -0.6 239,030 + -0.5 239,031 - +1.7 239,031 - -0.2 239,031 - -1.3 239,031 - -1.0 239,031 - -1.1 239,031 - +0.7 239,031 - -0.0 239,031 - +0.3 239,031 - +0.5 239,031 - -1.1 239,054 + -0.3 239,170 - Xcc-8004.241.1 0.44 -0.1 239,170 - Xcc-8004.241.1 0.44 -0.3 239,170 - Xcc-8004.241.1 0.44 +0.4 239,170 - Xcc-8004.241.1 0.44 +0.0 239,174 - Xcc-8004.241.1 0.46 -0.8 239,174 - Xcc-8004.241.1 0.46 -0.2 239,174 - Xcc-8004.241.1 0.46 -0.1 239,174 - Xcc-8004.241.1 0.46 +1.1 239,174 - Xcc-8004.241.1 0.46 +0.2 239,174 - Xcc-8004.241.1 0.46 +0.3 239,174 - Xcc-8004.241.1 0.46 -0.2 239,174 - Xcc-8004.241.1 0.46 +0.6 239,174 - Xcc-8004.241.1 0.46 -0.7 239,303 + +0.5 239,303 + +0.2 239,303 + -0.0 239,304 - -0.6 239,304 - -0.6 239,304 - -0.3 239,304 - +0.7 239,304 - +0.7 239,333 + -1.2 239,333 + -0.8 239,333 + -2.0 239,333 + -0.8 239,333 + +1.1 239,333 + +0.5 239,333 + -1.8 239,334 - +0.9 239,334 - +0.8 239,334 - +0.2 239,334 - -0.4 239,334 - -0.3 239,334 - -0.5 239,334 - -0.1 239,334 - +0.9 239,443 + Xcc-8004.242.1 0.18 -0.4 239,443 + Xcc-8004.242.1 0.18 +0.3 239,444 - Xcc-8004.242.1 0.18 +0.5 239,444 - Xcc-8004.242.1 0.18 +0.7 239,531 + Xcc-8004.242.1 0.41 -1.4 239,531 + Xcc-8004.242.1 0.41 +0.7 239,532 - Xcc-8004.242.1 0.41 +0.1 239,614 + Xcc-8004.242.1 0.63 +0.1 239,614 + Xcc-8004.242.1 0.63 +1.9 239,614 + Xcc-8004.242.1 0.63 +0.1 239,614 + Xcc-8004.242.1 0.63 -0.5 239,614 + Xcc-8004.242.1 0.63 -0.2 239,614 + Xcc-8004.242.1 0.63 -1.8 239,614 + Xcc-8004.242.1 0.63 +0.4 239,614 + Xcc-8004.242.1 0.63 -2.0 239,614 + Xcc-8004.242.1 0.63 +0.9 239,614 + Xcc-8004.242.1 0.63 -0.3 239,614 + Xcc-8004.242.1 0.63 -0.5 239,614 + Xcc-8004.242.1 0.63 +0.1 239,614 + Xcc-8004.242.1 0.63 +0.3 239,615 - Xcc-8004.242.1 0.63 -0.7 239,615 - Xcc-8004.242.1 0.63 -0.9 239,615 - Xcc-8004.242.1 0.63 -0.2 239,615 - Xcc-8004.242.1 0.63 +0.8 239,615 - Xcc-8004.242.1 0.63 +0.8 239,626 - Xcc-8004.242.1 0.66 +0.7 239,753 + +0.6 239,753 + +0.1 239,754 - +0.5 239,783 + +0.6 239,783 + -1.4 239,783 + +1.0 239,783 + +0.4 239,784 - -2.1 239,784 - +0.2 239,784 - +0.1 239,784 - +0.3 239,784 - -0.5 239,850 + -0.1 239,850 + +0.1 239,850 + +0.0 239,851 - +2.0 239,851 - -0.1 239,895 - -0.9 239,938 + +1.3 239,938 + -0.8 239,938 + -1.0 239,938 + -0.1 239,938 + +0.1 239,938 + +0.4 239,939 - -1.5 239,939 - -1.3 239,939 - +0.6 239,939 - +0.8 239,939 - +0.2 239,946 - +0.3 239,946 - +0.0 239,946 - -0.1 239,991 + +0.2 239,991 + -3.0 239,991 + +0.4 239,991 + -0.5 239,991 + -0.9 239,992 - +1.0 239,992 - -0.4 239,992 - -3.1 239,992 - -0.6 239,992 - -0.1 239,992 - +0.6 240,210 - Xcc-8004.244.1 0.31 -1.1 240,466 - Xcc-8004.244.1 0.62 -0.8 240,466 - Xcc-8004.244.1 0.62 -0.9 240,543 - Xcc-8004.244.1 0.71 -0.2 240,617 + Xcc-8004.244.1 0.80 -1.3 240,618 - Xcc-8004.244.1 0.80 -1.0
Or see this region's nucleotide sequence