Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2369.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2366.1 and Xcc-8004.2368.1 overlap by 4 nucleotidesXcc-8004.2368.1 and Xcc-8004.2369.1 overlap by 4 nucleotidesXcc-8004.2369.1 and Xcc-8004.2370.1 overlap by 4 nucleotides Xcc-8004.2366.1: Xcc-8004.2366.1 - Sugar ABC transporter, periplasmic sugar-binding protein USSDB1B, at 2,310,135 to 2,311,481 Xcc-8004.2366.1 Xcc-8004.2368.1: Xcc-8004.2368.1 - N-Acetyl-D-glucosamine ABC transport system, permease protein 1, at 2,311,478 to 2,312,362 Xcc-8004.2368.1 Xcc-8004.2369.1: Xcc-8004.2369.1 - Sugar ABC transporter, sugar permease protein 2 USSDB1D, at 2,312,359 to 2,313,195 Xcc-8004.2369.1 Xcc-8004.2370.1: Xcc-8004.2370.1 - Hypothetical protein USSDB1E, at 2,313,192 to 2,316,356 Xcc-8004.2370.1 Position (kb) 2312 2313 2314Strain fitness (log2 ratio) -2 -1 0 1 2at 2311.386 kb on + strandat 2311.387 kb on - strandat 2311.601 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.650 kb on - strand, within Xcc-8004.2368.1at 2311.650 kb on - strand, within Xcc-8004.2368.1at 2311.696 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.704 kb on - strand, within Xcc-8004.2368.1at 2311.704 kb on - strand, within Xcc-8004.2368.1at 2311.704 kb on - strand, within Xcc-8004.2368.1at 2311.704 kb on - strand, within Xcc-8004.2368.1at 2311.860 kb on - strand, within Xcc-8004.2368.1at 2311.860 kb on - strand, within Xcc-8004.2368.1at 2311.878 kb on - strand, within Xcc-8004.2368.1at 2311.994 kb on + strand, within Xcc-8004.2368.1at 2311.994 kb on + strand, within Xcc-8004.2368.1at 2311.994 kb on + strand, within Xcc-8004.2368.1at 2311.995 kb on - strand, within Xcc-8004.2368.1at 2312.045 kb on + strand, within Xcc-8004.2368.1at 2312.045 kb on + strand, within Xcc-8004.2368.1at 2312.045 kb on + strand, within Xcc-8004.2368.1at 2312.180 kb on + strand, within Xcc-8004.2368.1at 2312.181 kb on - strand, within Xcc-8004.2368.1at 2312.181 kb on - strand, within Xcc-8004.2368.1at 2312.181 kb on - strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.229 kb on - strand, within Xcc-8004.2368.1at 2312.358 kb on + strandat 2312.358 kb on + strandat 2312.359 kb on - strandat 2312.359 kb on - strandat 2312.359 kb on - strandat 2312.359 kb on - strandat 2312.539 kb on + strand, within Xcc-8004.2369.1at 2312.539 kb on + strand, within Xcc-8004.2369.1at 2312.540 kb on - strand, within Xcc-8004.2369.1at 2312.823 kb on + strand, within Xcc-8004.2369.1at 2312.842 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.132 kb on - strandat 2313.132 kb on - strandat 2313.154 kb on + strandat 2313.154 kb on + strandat 2313.157 kb on + strandat 2313.157 kb on + strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.382 kb on - strandat 2313.382 kb on - strandat 2313.382 kb on - strandat 2313.382 kb on - strandat 2313.405 kb on + strandat 2313.405 kb on + strandat 2313.405 kb on + strandat 2313.406 kb on - strandat 2313.406 kb on - strandat 2313.406 kb on - strandat 2313.450 kb on + strandat 2313.450 kb on + strandat 2313.451 kb on - strandat 2313.451 kb on - strandat 2313.451 kb on - strandat 2313.588 kb on + strand, within Xcc-8004.2370.1at 2313.672 kb on + strand, within Xcc-8004.2370.1at 2313.672 kb on + strand, within Xcc-8004.2370.1at 2313.672 kb on + strand, within Xcc-8004.2370.1at 2313.673 kb on - strand, within Xcc-8004.2370.1at 2313.673 kb on - strand, within Xcc-8004.2370.1at 2313.673 kb on - strand, within Xcc-8004.2370.1at 2313.673 kb on - strand, within Xcc-8004.2370.1at 2313.673 kb on - strand, within Xcc-8004.2370.1at 2313.673 kb on - strand, within Xcc-8004.2370.1at 2313.936 kb on + strand, within Xcc-8004.2370.1at 2313.937 kb on - strand, within Xcc-8004.2370.1at 2313.937 kb on - strand, within Xcc-8004.2370.1at 2313.965 kb on + strand, within Xcc-8004.2370.1at 2313.965 kb on + strand, within Xcc-8004.2370.1at 2314.044 kb on + strand, within Xcc-8004.2370.1at 2314.045 kb on - strand, within Xcc-8004.2370.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
2,311,386 + -0.5
2,311,387 - -0.3
2,311,601 + Xcc-8004.2368.1 0.14 +0.4
2,311,649 + Xcc-8004.2368.1 0.19 -0.3
2,311,649 + Xcc-8004.2368.1 0.19 -0.7
2,311,649 + Xcc-8004.2368.1 0.19 +1.6
2,311,649 + Xcc-8004.2368.1 0.19 -0.2
2,311,649 + Xcc-8004.2368.1 0.19 -0.0
2,311,649 + Xcc-8004.2368.1 0.19 -0.5
2,311,650 - Xcc-8004.2368.1 0.19 -0.3
2,311,650 - Xcc-8004.2368.1 0.19 -0.5
2,311,696 + Xcc-8004.2368.1 0.25 +0.0
2,311,703 + Xcc-8004.2368.1 0.25 -0.2
2,311,703 + Xcc-8004.2368.1 0.25 -0.5
2,311,703 + Xcc-8004.2368.1 0.25 +0.1
2,311,703 + Xcc-8004.2368.1 0.25 +0.3
2,311,703 + Xcc-8004.2368.1 0.25 -1.1
2,311,704 - Xcc-8004.2368.1 0.26 -0.3
2,311,704 - Xcc-8004.2368.1 0.26 -0.4
2,311,704 - Xcc-8004.2368.1 0.26 +1.0
2,311,704 - Xcc-8004.2368.1 0.26 +0.5
2,311,860 - Xcc-8004.2368.1 0.43 -0.4
2,311,860 - Xcc-8004.2368.1 0.43 +0.2
2,311,878 - Xcc-8004.2368.1 0.45 +0.1
2,311,994 + Xcc-8004.2368.1 0.58 +0.6
2,311,994 + Xcc-8004.2368.1 0.58 -0.7
2,311,994 + Xcc-8004.2368.1 0.58 +0.1
2,311,995 - Xcc-8004.2368.1 0.58 +0.4
2,312,045 + Xcc-8004.2368.1 0.64 -0.7
2,312,045 + Xcc-8004.2368.1 0.64 +0.1
2,312,045 + Xcc-8004.2368.1 0.64 -0.7
2,312,180 + Xcc-8004.2368.1 0.79 +0.1
2,312,181 - Xcc-8004.2368.1 0.79 -0.0
2,312,181 - Xcc-8004.2368.1 0.79 +0.8
2,312,181 - Xcc-8004.2368.1 0.79 +0.5
2,312,228 + Xcc-8004.2368.1 0.85 -0.4
2,312,228 + Xcc-8004.2368.1 0.85 -1.9
2,312,228 + Xcc-8004.2368.1 0.85 -0.6
2,312,228 + Xcc-8004.2368.1 0.85 -0.5
2,312,228 + Xcc-8004.2368.1 0.85 +2.2
2,312,228 + Xcc-8004.2368.1 0.85 -0.3
2,312,228 + Xcc-8004.2368.1 0.85 -1.5
2,312,228 + Xcc-8004.2368.1 0.85 +1.2
2,312,229 - Xcc-8004.2368.1 0.85 -0.2
2,312,358 + +0.3
2,312,358 + +1.7
2,312,359 - +1.2
2,312,359 - +0.9
2,312,359 - -0.8
2,312,359 - +0.6
2,312,539 + Xcc-8004.2369.1 0.22 -0.3
2,312,539 + Xcc-8004.2369.1 0.22 -0.3
2,312,540 - Xcc-8004.2369.1 0.22 -0.7
2,312,823 + Xcc-8004.2369.1 0.55 +0.4
2,312,842 + Xcc-8004.2369.1 0.58 -1.3
2,313,031 + Xcc-8004.2369.1 0.80 +1.3
2,313,031 + Xcc-8004.2369.1 0.80 -0.0
2,313,031 + Xcc-8004.2369.1 0.80 -0.3
2,313,031 + Xcc-8004.2369.1 0.80 +0.7
2,313,031 + Xcc-8004.2369.1 0.80 -0.4
2,313,031 + Xcc-8004.2369.1 0.80 -0.3
2,313,031 + Xcc-8004.2369.1 0.80 -0.5
2,313,031 + Xcc-8004.2369.1 0.80 -0.2
2,313,032 - Xcc-8004.2369.1 0.80 +1.8
2,313,032 - Xcc-8004.2369.1 0.80 -0.4
2,313,032 - Xcc-8004.2369.1 0.80 -0.8
2,313,032 - Xcc-8004.2369.1 0.80 -0.4
2,313,032 - Xcc-8004.2369.1 0.80 +0.5
2,313,032 - Xcc-8004.2369.1 0.80 -0.3
2,313,032 - Xcc-8004.2369.1 0.80 -0.8
2,313,131 + +1.2
2,313,131 + +0.4
2,313,131 + -0.6
2,313,131 + -1.2
2,313,131 + +0.1
2,313,131 + -0.7
2,313,132 - -0.7
2,313,132 - -1.4
2,313,154 + -0.7
2,313,154 + -0.6
2,313,157 + +0.4
2,313,157 + -0.6
2,313,158 - -0.2
2,313,158 - +1.0
2,313,158 - -0.6
2,313,158 - +0.8
2,313,158 - -0.1
2,313,158 - -1.4
2,313,158 - -1.1
2,313,382 - +0.2
2,313,382 - -0.6
2,313,382 - -2.0
2,313,382 - +1.0
2,313,405 + -0.3
2,313,405 + -0.2
2,313,405 + -0.7
2,313,406 - -0.5
2,313,406 - +0.1
2,313,406 - +0.1
2,313,450 + -0.2
2,313,450 + +0.2
2,313,451 - +0.6
2,313,451 - -2.3
2,313,451 - -1.3
2,313,588 + Xcc-8004.2370.1 0.13 +0.0
2,313,672 + Xcc-8004.2370.1 0.15 -0.8
2,313,672 + Xcc-8004.2370.1 0.15 -0.1
2,313,672 + Xcc-8004.2370.1 0.15 -0.8
2,313,673 - Xcc-8004.2370.1 0.15 -1.2
2,313,673 - Xcc-8004.2370.1 0.15 -0.8
2,313,673 - Xcc-8004.2370.1 0.15 -0.7
2,313,673 - Xcc-8004.2370.1 0.15 -0.4
2,313,673 - Xcc-8004.2370.1 0.15 -0.6
2,313,673 - Xcc-8004.2370.1 0.15 +0.3
2,313,936 + Xcc-8004.2370.1 0.24 -1.9
2,313,937 - Xcc-8004.2370.1 0.24 +0.4
2,313,937 - Xcc-8004.2370.1 0.24 -2.3
2,313,965 + Xcc-8004.2370.1 0.24 +0.9
2,313,965 + Xcc-8004.2370.1 0.24 -2.3
2,314,044 + Xcc-8004.2370.1 0.27 -1.4
2,314,045 - Xcc-8004.2370.1 0.27 -2.0

Or see this region's nucleotide sequence