Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2357.1 and Xcc-8004.2358.1 overlap by 62 nucleotides Xcc-8004.2358.1 and Xcc-8004.2360.1 are separated by 366 nucleotides Xcc-8004.2360.1 and Xcc-8004.2361.1 overlap by 4 nucleotides
Xcc-8004.2357.1: Xcc-8004.2357.1 - Segregation and condensation protein B, at 2,300,826 to 2,302,031
Xcc-8004.2357.1
Xcc-8004.2358.1: Xcc-8004.2358.1 - Segregation and condensation protein A, at 2,301,970 to 2,302,875
Xcc-8004.2358.1
Xcc-8004.2360.1: Xcc-8004.2360.1 - YciL protein, at 2,303,242 to 2,303,541
Xcc-8004.2360.1
Xcc-8004.2361.1: Xcc-8004.2361.1 - Cell division protein BolA, at 2,303,538 to 2,303,807
Xcc-8004.2361.1
Position (kb) 2301
2302
2303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2301.330 kb on - strand, within Xcc-8004.2357.1 at 2301.330 kb on - strand, within Xcc-8004.2357.1 at 2301.330 kb on - strand, within Xcc-8004.2357.1 at 2301.488 kb on - strand, within Xcc-8004.2357.1 at 2301.488 kb on - strand, within Xcc-8004.2357.1 at 2301.691 kb on + strand, within Xcc-8004.2357.1 at 2301.692 kb on - strand, within Xcc-8004.2357.1 at 2301.692 kb on - strand, within Xcc-8004.2357.1 at 2301.692 kb on - strand, within Xcc-8004.2357.1 at 2302.035 kb on + strand at 2302.036 kb on - strand at 2302.036 kb on - strand at 2302.036 kb on - strand at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.191 kb on - strand, within Xcc-8004.2358.1 at 2302.191 kb on - strand, within Xcc-8004.2358.1 at 2302.305 kb on - strand, within Xcc-8004.2358.1 at 2302.305 kb on - strand, within Xcc-8004.2358.1 at 2302.305 kb on - strand, within Xcc-8004.2358.1 at 2302.305 kb on - strand, within Xcc-8004.2358.1 at 2302.452 kb on - strand, within Xcc-8004.2358.1 at 2302.452 kb on - strand, within Xcc-8004.2358.1 at 2302.452 kb on - strand, within Xcc-8004.2358.1 at 2302.452 kb on - strand, within Xcc-8004.2358.1 at 2302.572 kb on - strand, within Xcc-8004.2358.1 at 2302.572 kb on - strand, within Xcc-8004.2358.1 at 2302.572 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.625 kb on + strand, within Xcc-8004.2358.1 at 2302.626 kb on - strand, within Xcc-8004.2358.1 at 2302.626 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.946 kb on + strand at 2302.947 kb on - strand at 2302.947 kb on - strand at 2302.947 kb on - strand at 2302.947 kb on - strand at 2302.947 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2303.061 kb on - strand at 2303.061 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.410 kb on - strand, within Xcc-8004.2360.1 at 2303.410 kb on - strand, within Xcc-8004.2360.1 at 2303.410 kb on - strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.728 kb on - strand, within Xcc-8004.2361.1 at 2303.728 kb on - strand, within Xcc-8004.2361.1 at 2303.728 kb on - strand, within Xcc-8004.2361.1 at 2303.728 kb on - strand, within Xcc-8004.2361.1 at 2303.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 2,301,330 - Xcc-8004.2357.1 0.42 -0.3 2,301,330 - Xcc-8004.2357.1 0.42 +1.1 2,301,330 - Xcc-8004.2357.1 0.42 -1.0 2,301,488 - Xcc-8004.2357.1 0.55 +1.3 2,301,488 - Xcc-8004.2357.1 0.55 +0.3 2,301,691 + Xcc-8004.2357.1 0.72 +2.6 2,301,692 - Xcc-8004.2357.1 0.72 -0.0 2,301,692 - Xcc-8004.2357.1 0.72 -2.8 2,301,692 - Xcc-8004.2357.1 0.72 +0.6 2,302,035 + +1.2 2,302,036 - -1.9 2,302,036 - +0.9 2,302,036 - -0.9 2,302,062 - Xcc-8004.2358.1 0.10 -0.3 2,302,062 - Xcc-8004.2358.1 0.10 -0.2 2,302,062 - Xcc-8004.2358.1 0.10 +1.3 2,302,062 - Xcc-8004.2358.1 0.10 -0.9 2,302,062 - Xcc-8004.2358.1 0.10 -1.2 2,302,191 - Xcc-8004.2358.1 0.24 -0.8 2,302,191 - Xcc-8004.2358.1 0.24 +0.6 2,302,305 - Xcc-8004.2358.1 0.37 -0.0 2,302,305 - Xcc-8004.2358.1 0.37 +2.7 2,302,305 - Xcc-8004.2358.1 0.37 -0.7 2,302,305 - Xcc-8004.2358.1 0.37 -1.7 2,302,452 - Xcc-8004.2358.1 0.53 -0.5 2,302,452 - Xcc-8004.2358.1 0.53 -1.3 2,302,452 - Xcc-8004.2358.1 0.53 -2.1 2,302,452 - Xcc-8004.2358.1 0.53 +0.8 2,302,572 - Xcc-8004.2358.1 0.66 -0.0 2,302,572 - Xcc-8004.2358.1 0.66 +0.2 2,302,572 - Xcc-8004.2358.1 0.66 +0.6 2,302,617 - Xcc-8004.2358.1 0.71 -1.2 2,302,617 - Xcc-8004.2358.1 0.71 -2.1 2,302,617 - Xcc-8004.2358.1 0.71 +0.3 2,302,617 - Xcc-8004.2358.1 0.71 -0.1 2,302,617 - Xcc-8004.2358.1 0.71 -0.2 2,302,617 - Xcc-8004.2358.1 0.71 -0.2 2,302,617 - Xcc-8004.2358.1 0.71 +1.2 2,302,625 + Xcc-8004.2358.1 0.72 +0.2 2,302,626 - Xcc-8004.2358.1 0.72 +1.2 2,302,626 - Xcc-8004.2358.1 0.72 +0.2 2,302,755 - Xcc-8004.2358.1 0.87 +1.2 2,302,755 - Xcc-8004.2358.1 0.87 -0.8 2,302,755 - Xcc-8004.2358.1 0.87 +1.0 2,302,755 - Xcc-8004.2358.1 0.87 -0.3 2,302,755 - Xcc-8004.2358.1 0.87 +0.2 2,302,755 - Xcc-8004.2358.1 0.87 +0.6 2,302,755 - Xcc-8004.2358.1 0.87 -1.6 2,302,755 - Xcc-8004.2358.1 0.87 -1.0 2,302,755 - Xcc-8004.2358.1 0.87 +1.2 2,302,755 - Xcc-8004.2358.1 0.87 +0.6 2,302,755 - Xcc-8004.2358.1 0.87 -0.3 2,302,755 - Xcc-8004.2358.1 0.87 +0.3 2,302,755 - Xcc-8004.2358.1 0.87 -0.3 2,302,755 - Xcc-8004.2358.1 0.87 +2.2 2,302,755 - Xcc-8004.2358.1 0.87 +0.6 2,302,755 - Xcc-8004.2358.1 0.87 -0.9 2,302,755 - Xcc-8004.2358.1 0.87 +0.9 2,302,755 - Xcc-8004.2358.1 0.87 -0.5 2,302,755 - Xcc-8004.2358.1 0.87 -0.3 2,302,755 - Xcc-8004.2358.1 0.87 -0.5 2,302,946 + +1.6 2,302,947 - +0.6 2,302,947 - -0.5 2,302,947 - +0.2 2,302,947 - +1.1 2,302,947 - +1.2 2,302,996 - -2.5 2,302,996 - -0.4 2,302,996 - -0.3 2,302,996 - +0.5 2,302,996 - +0.8 2,302,996 - -1.0 2,302,996 - +1.2 2,302,996 - -0.4 2,302,996 - -0.8 2,303,061 - +0.6 2,303,061 - +0.2 2,303,162 - -0.1 2,303,162 - -1.6 2,303,162 - +1.6 2,303,162 - +1.7 2,303,162 - +0.7 2,303,162 - -0.9 2,303,162 - -0.5 2,303,248 + -0.4 2,303,248 + +0.4 2,303,248 + +0.1 2,303,248 + +0.5 2,303,248 + +0.2 2,303,248 + -0.6 2,303,249 - -2.2 2,303,249 - +0.2 2,303,249 - +0.1 2,303,249 - +0.2 2,303,249 - +0.2 2,303,249 - -0.9 2,303,249 - +0.4 2,303,252 + -0.4 2,303,252 + -0.5 2,303,252 + -0.5 2,303,252 + -0.8 2,303,252 + -2.6 2,303,252 + +1.2 2,303,252 + -0.8 2,303,252 + +0.2 2,303,252 + +0.8 2,303,253 - -1.1 2,303,253 - +0.0 2,303,253 - +0.3 2,303,253 - -0.8 2,303,253 - -0.3 2,303,253 - -0.1 2,303,253 - -1.8 2,303,253 - -1.4 2,303,263 + +0.6 2,303,263 + -0.4 2,303,263 + -0.5 2,303,263 + -0.7 2,303,263 + +1.2 2,303,263 + +0.9 2,303,263 + -1.0 2,303,263 + -0.3 2,303,264 - +0.5 2,303,264 - +0.3 2,303,264 - -0.9 2,303,264 - -0.3 2,303,264 - +1.7 2,303,264 - +1.4 2,303,264 - +0.2 2,303,264 - -0.2 2,303,410 - Xcc-8004.2360.1 0.56 -0.3 2,303,410 - Xcc-8004.2360.1 0.56 -0.2 2,303,410 - Xcc-8004.2360.1 0.56 -0.8 2,303,479 + Xcc-8004.2360.1 0.79 -0.3 2,303,479 + Xcc-8004.2360.1 0.79 +1.6 2,303,479 + Xcc-8004.2360.1 0.79 -1.0 2,303,479 + Xcc-8004.2360.1 0.79 -1.9 2,303,479 + Xcc-8004.2360.1 0.79 -2.0 2,303,480 - Xcc-8004.2360.1 0.79 +0.4 2,303,480 - Xcc-8004.2360.1 0.79 -0.7 2,303,480 - Xcc-8004.2360.1 0.79 +0.7 2,303,480 - Xcc-8004.2360.1 0.79 +0.2 2,303,480 - Xcc-8004.2360.1 0.79 +1.3 2,303,480 - Xcc-8004.2360.1 0.79 -0.2 2,303,480 - Xcc-8004.2360.1 0.79 -1.2 2,303,480 - Xcc-8004.2360.1 0.79 +1.7 2,303,480 - Xcc-8004.2360.1 0.79 +0.6 2,303,480 - Xcc-8004.2360.1 0.79 -2.8 2,303,480 - Xcc-8004.2360.1 0.79 +0.4 2,303,480 - Xcc-8004.2360.1 0.79 -0.2 2,303,480 - Xcc-8004.2360.1 0.79 -0.3 2,303,480 - Xcc-8004.2360.1 0.79 -1.7 2,303,480 - Xcc-8004.2360.1 0.79 -1.0 2,303,497 + Xcc-8004.2360.1 0.85 -0.6 2,303,497 + Xcc-8004.2360.1 0.85 -0.2 2,303,497 + Xcc-8004.2360.1 0.85 +1.1 2,303,497 + Xcc-8004.2360.1 0.85 -1.1 2,303,497 + Xcc-8004.2360.1 0.85 -0.5 2,303,497 + Xcc-8004.2360.1 0.85 +0.5 2,303,497 + Xcc-8004.2360.1 0.85 -0.3 2,303,497 + Xcc-8004.2360.1 0.85 -0.7 2,303,497 + Xcc-8004.2360.1 0.85 +0.5 2,303,497 + Xcc-8004.2360.1 0.85 -1.6 2,303,497 + Xcc-8004.2360.1 0.85 +0.4 2,303,497 + Xcc-8004.2360.1 0.85 +0.4 2,303,497 + Xcc-8004.2360.1 0.85 -0.2 2,303,497 + Xcc-8004.2360.1 0.85 +0.4 2,303,497 + Xcc-8004.2360.1 0.85 +0.5 2,303,497 + Xcc-8004.2360.1 0.85 -0.4 2,303,498 - Xcc-8004.2360.1 0.85 -0.4 2,303,498 - Xcc-8004.2360.1 0.85 +0.7 2,303,498 - Xcc-8004.2360.1 0.85 +1.3 2,303,498 - Xcc-8004.2360.1 0.85 -0.8 2,303,498 - Xcc-8004.2360.1 0.85 -1.1 2,303,498 - Xcc-8004.2360.1 0.85 -0.3 2,303,498 - Xcc-8004.2360.1 0.85 +1.3 2,303,498 - Xcc-8004.2360.1 0.85 -0.1 2,303,498 - Xcc-8004.2360.1 0.85 +0.2 2,303,498 - Xcc-8004.2360.1 0.85 +0.5 2,303,498 - Xcc-8004.2360.1 0.85 -0.5 2,303,498 - Xcc-8004.2360.1 0.85 -0.4 2,303,498 - Xcc-8004.2360.1 0.85 +0.4 2,303,498 - Xcc-8004.2360.1 0.85 -1.9 2,303,727 + Xcc-8004.2361.1 0.70 -1.4 2,303,727 + Xcc-8004.2361.1 0.70 -2.0 2,303,727 + Xcc-8004.2361.1 0.70 +0.0 2,303,727 + Xcc-8004.2361.1 0.70 +0.8 2,303,727 + Xcc-8004.2361.1 0.70 -0.2 2,303,728 - Xcc-8004.2361.1 0.70 -1.0 2,303,728 - Xcc-8004.2361.1 0.70 -0.5 2,303,728 - Xcc-8004.2361.1 0.70 -0.5 2,303,728 - Xcc-8004.2361.1 0.70 -0.2 2,303,806 - +0.6
Or see this region's nucleotide sequence