Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2216.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,166,204	+				-0.2
2,166,204	+				+1.1
2,166,204	+				+1.1
2,166,204	+				-0.3
2,166,204	+				+0.4
2,166,204	+				+1.3
2,166,204	+				+0.5
2,166,204	+				-0.1
2,166,205	-				-0.3
2,166,205	-				+0.2
2,166,283	+				-0.2
2,166,283	+				-1.8
2,166,297	-				-0.2
2,166,297	-				+1.0
2,166,297	-				-0.9
2,166,297	-				+0.5
2,166,448	-				+1.4
2,166,448	-				+0.0
2,166,469	+				-0.2
2,166,741	+		Xcc-8004.2215.1	0.78	+0.3
2,166,985	+				-0.2
2,167,008	+				+1.2
2,167,009	-				-0.4
2,167,149	-				+0.1
2,167,149	-				+0.3
2,167,203	-				+0.4
2,167,277	+				-1.4
2,167,305	+		Xcc-8004.2216.1	0.10	+0.0
2,167,305	+		Xcc-8004.2216.1	0.10	-1.3
2,167,306	-		Xcc-8004.2216.1	0.11	-1.9
2,167,508	+		Xcc-8004.2216.1	0.31	-2.1
2,167,509	-		Xcc-8004.2216.1	0.31	-1.5
2,167,509	-		Xcc-8004.2216.1	0.31	-1.3
2,167,509	-		Xcc-8004.2216.1	0.31	-0.6
2,167,622	+		Xcc-8004.2216.1	0.42	-1.0
2,167,649	+		Xcc-8004.2216.1	0.45	-1.0
2,167,649	+		Xcc-8004.2216.1	0.45	-0.4
2,167,649	+		Xcc-8004.2216.1	0.45	-0.2
2,167,649	+		Xcc-8004.2216.1	0.45	-0.5
2,167,650	-		Xcc-8004.2216.1	0.45	-0.9
2,167,650	-		Xcc-8004.2216.1	0.45	+0.8
2,167,718	+		Xcc-8004.2216.1	0.52	-1.0
2,167,718	+		Xcc-8004.2216.1	0.52	-0.0
2,167,718	+		Xcc-8004.2216.1	0.52	-1.0
2,167,718	+		Xcc-8004.2216.1	0.52	+1.2
2,167,719	-		Xcc-8004.2216.1	0.52	-0.0
2,167,719	-		Xcc-8004.2216.1	0.52	+1.0
2,167,719	-		Xcc-8004.2216.1	0.52	+1.5
2,167,748	+		Xcc-8004.2216.1	0.55	-0.9
2,167,947	-		Xcc-8004.2216.1	0.75	-1.7
2,167,947	-		Xcc-8004.2216.1	0.75	-0.2
2,168,054	+		Xcc-8004.2216.1	0.85	-0.6
2,168,089	+		Xcc-8004.2216.1	0.89	-0.4
2,168,089	+		Xcc-8004.2216.1	0.89	-0.3
2,168,090	-		Xcc-8004.2216.1	0.89	-0.4
2,168,090	-		Xcc-8004.2216.1	0.89	+0.8
2,168,090	-		Xcc-8004.2216.1	0.89	+0.4
2,168,090	-		Xcc-8004.2216.1	0.89	+0.8
2,168,144	+				-0.6
2,168,144	+				+0.4
2,168,144	+				+1.2
2,168,145	-				-0.3
2,168,145	-				+0.1
2,168,145	-				-0.0
2,168,145	-				+0.6
2,168,145	-				-0.6
2,168,145	-				-0.0
2,168,469	-		Xcc-8004.2217.1	0.21	-0.5
2,168,512	+		Xcc-8004.2217.1	0.24	-0.3
2,168,512	+		Xcc-8004.2217.1	0.24	-0.3
2,168,512	+		Xcc-8004.2217.1	0.24	+0.5
2,168,513	-		Xcc-8004.2217.1	0.24	-1.0
2,168,513	-		Xcc-8004.2217.1	0.24	+0.1
2,168,513	-		Xcc-8004.2217.1	0.24	+0.3
2,169,149	-		Xcc-8004.2217.1	0.75	-0.0
2,169,149	-		Xcc-8004.2217.1	0.75	-1.6
2,169,151	+		Xcc-8004.2217.1	0.76	+3.1
2,169,151	+		Xcc-8004.2217.1	0.76	-0.0
2,169,151	+		Xcc-8004.2217.1	0.76	+1.5
2,169,152	-		Xcc-8004.2217.1	0.76	+3.1
2,169,152	-		Xcc-8004.2217.1	0.76	+0.5
2,169,152	-		Xcc-8004.2217.1	0.76	-0.2