Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2013.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,936,938	-		Xcc-8004.2012.1	0.38	+4.1
1,937,234	+		Xcc-8004.2012.1	0.64	+0.5
1,937,234	+		Xcc-8004.2012.1	0.64	-2.2
1,937,234	+		Xcc-8004.2012.1	0.64	-1.4
1,937,234	+		Xcc-8004.2012.1	0.64	-0.8
1,937,234	+		Xcc-8004.2012.1	0.64	-0.8
1,937,234	+		Xcc-8004.2012.1	0.64	-0.6
1,937,234	+		Xcc-8004.2012.1	0.64	+2.1
1,937,235	-		Xcc-8004.2012.1	0.64	-0.8
1,937,235	-		Xcc-8004.2012.1	0.64	-0.2
1,937,235	-		Xcc-8004.2012.1	0.64	-0.5
1,937,235	-		Xcc-8004.2012.1	0.64	+1.4
1,937,235	-		Xcc-8004.2012.1	0.64	+0.7
1,937,235	-		Xcc-8004.2012.1	0.64	+0.1
1,937,235	-		Xcc-8004.2012.1	0.64	-0.7
1,937,235	-		Xcc-8004.2012.1	0.64	-0.5
1,937,235	-		Xcc-8004.2012.1	0.64	+0.5
1,937,235	-		Xcc-8004.2012.1	0.64	-2.3
1,937,552	-				+0.0
1,937,645	+				-0.1
1,937,646	-				+0.1
1,937,682	+				-0.1
1,937,683	-				+0.4
1,937,683	-				+0.2
1,937,683	-				-0.0
1,937,683	-				+0.8
1,937,683	-				+0.7
1,937,683	-				-1.4
1,937,683	-				-0.1
1,937,769	+				-0.4
1,937,769	+				+0.1
1,937,769	+				-1.1
1,937,769	+				+1.7
1,937,832	+				+0.6
1,937,832	+				-2.3
1,937,832	+				+0.3
1,937,832	+				+2.1
1,937,832	+				+0.5
1,937,832	+				+0.9
1,937,832	+				-0.1
1,937,832	+				-0.7
1,937,832	+				+0.8
1,937,833	-				+0.2
1,937,833	-				-0.5
1,937,833	-				-0.2
1,937,833	-				+0.1
1,937,833	-				+0.7
1,937,833	-				-0.6
1,937,939	+		Xcc-8004.2013.1	0.10	-0.6
1,937,969	+		Xcc-8004.2013.1	0.15	+0.6
1,937,969	+		Xcc-8004.2013.1	0.15	-0.5
1,937,970	-		Xcc-8004.2013.1	0.15	-1.8
1,937,970	-		Xcc-8004.2013.1	0.15	+1.3
1,937,972	+		Xcc-8004.2013.1	0.16	+0.1
1,937,972	+		Xcc-8004.2013.1	0.16	-0.3
1,937,972	+		Xcc-8004.2013.1	0.16	-0.6
1,937,972	+		Xcc-8004.2013.1	0.16	-1.3
1,937,972	+		Xcc-8004.2013.1	0.16	+0.5
1,937,972	+		Xcc-8004.2013.1	0.16	+1.5
1,937,973	-		Xcc-8004.2013.1	0.16	-1.2
1,938,046	-		Xcc-8004.2013.1	0.28	-0.9
1,938,230	+		Xcc-8004.2013.1	0.60	-0.8
1,938,230	+		Xcc-8004.2013.1	0.60	-0.4
1,938,237	+		Xcc-8004.2013.1	0.61	+0.7
1,938,237	+		Xcc-8004.2013.1	0.61	-0.3
1,938,238	-		Xcc-8004.2013.1	0.62	+0.0
1,938,238	-		Xcc-8004.2013.1	0.62	-0.3
1,938,238	-		Xcc-8004.2013.1	0.62	+0.1
1,938,238	-		Xcc-8004.2013.1	0.62	+1.1
1,938,431	+				+0.3
1,938,432	-				-2.0
1,938,509	+				-0.6
1,938,509	+				+0.1
1,938,509	+				-0.5
1,938,509	+				-1.1
1,938,509	+				-3.3
1,938,509	+				-0.2
1,938,509	+				+0.1
1,938,509	+				+0.6
1,938,509	+				-1.6
1,938,509	+				+0.5
1,938,509	+				-0.7
1,938,510	-				-1.4
1,938,510	-				+0.2
1,938,510	-				-1.4
1,938,510	-				-0.1
1,938,510	-				-0.6
1,938,510	-				-0.3
1,938,510	-				-0.2
1,938,510	-				-0.5
1,938,534	+				+0.7
1,938,534	+				+0.2
1,938,534	+				-0.3
1,938,773	+		Xcc-8004.2014.1	0.60	+0.1
1,938,890	+				-1.9
1,938,890	+				-0.9
1,938,890	+				+0.7
1,938,890	+				-0.4
1,938,891	-				+1.6
1,938,891	-				+1.7
1,939,060	+		Xcc-8004.2015.1	0.22	-2.2
1,939,060	+		Xcc-8004.2015.1	0.22	-2.3
1,939,060	+		Xcc-8004.2015.1	0.22	-0.5
1,939,060	+		Xcc-8004.2015.1	0.22	+2.5
1,939,061	-		Xcc-8004.2015.1	0.22	+0.7
1,939,099	+		Xcc-8004.2015.1	0.27	-1.1
1,939,099	+		Xcc-8004.2015.1	0.27	-0.6
1,939,135	+		Xcc-8004.2015.1	0.32	-1.3
1,939,135	+		Xcc-8004.2015.1	0.32	-2.9
1,939,381	+		Xcc-8004.2015.1	0.65	-2.0
1,939,381	+		Xcc-8004.2015.1	0.65	-1.0
1,939,381	+		Xcc-8004.2015.1	0.65	-0.7
1,939,382	-		Xcc-8004.2015.1	0.65	+1.5