Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1641.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,578,878	+		Xcc-8004.1640.1	0.24	+0.0
1,578,879	-		Xcc-8004.1640.1	0.24	+1.2
1,578,879	-		Xcc-8004.1640.1	0.24	-0.9
1,578,879	-		Xcc-8004.1640.1	0.24	-1.1
1,578,879	-		Xcc-8004.1640.1	0.24	+0.9
1,578,879	-		Xcc-8004.1640.1	0.24	-0.6
1,578,879	-		Xcc-8004.1640.1	0.24	-0.8
1,579,092	+		Xcc-8004.1640.1	0.45	+0.8
1,579,092	+		Xcc-8004.1640.1	0.45	+0.1
1,579,093	-		Xcc-8004.1640.1	0.45	-1.2
1,579,415	+		Xcc-8004.1640.1	0.76	+0.0
1,579,415	+		Xcc-8004.1640.1	0.76	-1.5
1,579,415	+		Xcc-8004.1640.1	0.76	-1.0
1,579,416	-		Xcc-8004.1640.1	0.76	-1.3
1,579,550	-		Xcc-8004.1640.1	0.89	-0.3
1,579,562	+				-0.3
1,579,563	-				-0.2
1,579,563	-				+0.9
1,579,563	-				-1.4
1,579,709	+				+0.2
1,579,720	+				+0.9
1,579,720	+				+0.4
1,579,720	+				-0.1
1,579,720	+				-0.2
1,579,721	-				-0.3
1,579,721	-				-0.5
1,579,721	-				-0.4
1,579,778	+				+0.6
1,579,779	-				-1.0
1,579,813	-				+0.4
1,579,813	-				-0.8
1,579,872	+				-1.3
1,579,872	+				+0.2
1,579,873	-				-2.1
1,579,894	-				-0.7
1,579,897	-				+0.2
1,579,924	-				+0.5
1,579,938	+		Xcc-8004.1641.1	0.11	+0.3
1,579,938	+		Xcc-8004.1641.1	0.11	+0.2
1,579,939	-		Xcc-8004.1641.1	0.11	+1.4
1,579,939	-		Xcc-8004.1641.1	0.11	+1.2
1,579,939	-		Xcc-8004.1641.1	0.11	+0.5
1,579,959	+		Xcc-8004.1641.1	0.13	+1.2
1,580,016	-		Xcc-8004.1641.1	0.19	+0.3
1,580,016	-		Xcc-8004.1641.1	0.19	-0.8
1,580,016	-		Xcc-8004.1641.1	0.19	-0.6
1,580,040	+		Xcc-8004.1641.1	0.22	-0.6
1,580,182	-		Xcc-8004.1641.1	0.37	-0.6
1,580,322	+		Xcc-8004.1641.1	0.52	+0.1
1,580,322	+		Xcc-8004.1641.1	0.52	+1.7
1,580,322	+		Xcc-8004.1641.1	0.52	+1.2
1,580,323	-		Xcc-8004.1641.1	0.52	+0.0
1,580,323	-		Xcc-8004.1641.1	0.52	-0.3
1,580,331	+		Xcc-8004.1641.1	0.53	-1.1
1,580,332	-		Xcc-8004.1641.1	0.53	+0.1
1,581,217	+				-0.1
1,581,218	-				-0.9
1,581,218	-				-1.4
1,581,218	-				+2.8
1,581,218	-				+0.6
1,581,342	+				+0.0
1,581,481	+				+0.9
1,581,481	+				-0.1
1,581,482	-				+0.6
1,581,482	-				-0.4
1,581,531	+				+0.2
1,581,591	-				+0.5
1,581,591	-				-1.5
1,581,693	+				-2.5
1,581,693	+				-0.5
1,581,694	-				-0.5
1,581,694	-				-0.0
1,581,740	+				-0.1
1,581,741	-				+0.6