Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1489.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1488.1 and Xcc-8004.1489.1 are separated by 299 nucleotidesXcc-8004.1489.1 and Xcc-8004.1490.1 are separated by 86 nucleotides Xcc-8004.1488.1: Xcc-8004.1488.1 - Coenzyme PQQ synthesis protein B, at 1,417,161 to 1,418,060 Xcc-8004.1488.1 Xcc-8004.1489.1: Xcc-8004.1489.1 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I, at 1,418,360 to 1,420,672 Xcc-8004.1489.1 Xcc-8004.1490.1: Xcc-8004.1490.1 - FIG01211536: hypothetical protein, at 1,420,759 to 1,422,273 Xcc-8004.1490.1 Position (kb) 1418 1419 1420 1421Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1417.486 kb on + strand, within Xcc-8004.1488.1at 1417.486 kb on + strand, within Xcc-8004.1488.1at 1417.487 kb on - strand, within Xcc-8004.1488.1at 1417.575 kb on - strand, within Xcc-8004.1488.1at 1417.641 kb on - strand, within Xcc-8004.1488.1at 1417.669 kb on + strand, within Xcc-8004.1488.1at 1417.938 kb on - strand, within Xcc-8004.1488.1at 1417.949 kb on + strand, within Xcc-8004.1488.1at 1418.071 kb on + strandat 1418.071 kb on + strandat 1418.072 kb on - strandat 1418.072 kb on - strandat 1418.072 kb on - strandat 1418.146 kb on + strandat 1418.146 kb on + strandat 1418.181 kb on + strandat 1418.181 kb on + strandat 1418.182 kb on - strandat 1418.182 kb on - strandat 1418.213 kb on - strandat 1418.213 kb on - strandat 1418.233 kb on - strandat 1418.233 kb on - strandat 1418.274 kb on + strandat 1418.274 kb on + strandat 1418.274 kb on + strandat 1418.274 kb on + strandat 1418.275 kb on - strandat 1418.275 kb on - strandat 1418.275 kb on - strandat 1418.275 kb on - strandat 1418.275 kb on - strandat 1418.298 kb on + strandat 1418.298 kb on + strandat 1418.309 kb on + strandat 1418.309 kb on + strandat 1418.310 kb on - strandat 1418.310 kb on - strandat 1418.394 kb on + strandat 1418.394 kb on + strandat 1418.394 kb on + strandat 1418.464 kb on + strandat 1418.465 kb on - strandat 1418.469 kb on + strandat 1418.469 kb on + strandat 1418.469 kb on + strandat 1418.470 kb on - strandat 1418.470 kb on - strandat 1418.470 kb on - strandat 1418.470 kb on - strandat 1418.732 kb on - strand, within Xcc-8004.1489.1at 1418.743 kb on - strand, within Xcc-8004.1489.1at 1418.869 kb on + strand, within Xcc-8004.1489.1at 1418.869 kb on + strand, within Xcc-8004.1489.1at 1418.869 kb on + strand, within Xcc-8004.1489.1at 1418.869 kb on + strand, within Xcc-8004.1489.1at 1418.869 kb on + strand, within Xcc-8004.1489.1at 1418.869 kb on + strand, within Xcc-8004.1489.1at 1418.869 kb on + strand, within Xcc-8004.1489.1at 1418.870 kb on - strand, within Xcc-8004.1489.1at 1418.870 kb on - strand, within Xcc-8004.1489.1at 1418.872 kb on + strand, within Xcc-8004.1489.1at 1418.873 kb on - strand, within Xcc-8004.1489.1at 1418.958 kb on + strand, within Xcc-8004.1489.1at 1418.959 kb on - strand, within Xcc-8004.1489.1at 1418.959 kb on - strand, within Xcc-8004.1489.1at 1418.959 kb on - strand, within Xcc-8004.1489.1at 1419.107 kb on - strand, within Xcc-8004.1489.1at 1419.107 kb on - strand, within Xcc-8004.1489.1at 1419.161 kb on + strand, within Xcc-8004.1489.1at 1419.161 kb on + strand, within Xcc-8004.1489.1at 1419.161 kb on + strand, within Xcc-8004.1489.1at 1419.161 kb on + strand, within Xcc-8004.1489.1at 1419.162 kb on - strand, within Xcc-8004.1489.1at 1419.162 kb on - strand, within Xcc-8004.1489.1at 1419.162 kb on - strand, within Xcc-8004.1489.1at 1419.248 kb on + strand, within Xcc-8004.1489.1at 1419.248 kb on + strand, within Xcc-8004.1489.1at 1419.248 kb on + strand, within Xcc-8004.1489.1at 1419.248 kb on + strand, within Xcc-8004.1489.1at 1419.248 kb on + strand, within Xcc-8004.1489.1at 1419.248 kb on + strand, within Xcc-8004.1489.1at 1419.249 kb on - strand, within Xcc-8004.1489.1at 1419.249 kb on - strand, within Xcc-8004.1489.1at 1419.249 kb on - strand, within Xcc-8004.1489.1at 1419.249 kb on - strand, within Xcc-8004.1489.1at 1419.249 kb on - strand, within Xcc-8004.1489.1at 1419.249 kb on - strand, within Xcc-8004.1489.1at 1419.299 kb on + strand, within Xcc-8004.1489.1at 1419.347 kb on + strand, within Xcc-8004.1489.1at 1419.348 kb on - strand, within Xcc-8004.1489.1at 1419.348 kb on - strand, within Xcc-8004.1489.1at 1419.348 kb on - strand, within Xcc-8004.1489.1at 1419.348 kb on - strand, within Xcc-8004.1489.1at 1419.348 kb on - strand, within Xcc-8004.1489.1at 1419.348 kb on - strand, within Xcc-8004.1489.1at 1419.407 kb on + strand, within Xcc-8004.1489.1at 1419.407 kb on + strand, within Xcc-8004.1489.1at 1419.407 kb on + strand, within Xcc-8004.1489.1at 1419.408 kb on - strand, within Xcc-8004.1489.1at 1419.408 kb on - strand, within Xcc-8004.1489.1at 1419.408 kb on - strand, within Xcc-8004.1489.1at 1419.408 kb on - strand, within Xcc-8004.1489.1at 1419.435 kb on - strand, within Xcc-8004.1489.1at 1419.448 kb on + strand, within Xcc-8004.1489.1at 1419.449 kb on - strand, within Xcc-8004.1489.1at 1419.449 kb on - strand, within Xcc-8004.1489.1at 1419.548 kb on + strand, within Xcc-8004.1489.1at 1419.548 kb on + strand, within Xcc-8004.1489.1at 1419.548 kb on + strand, within Xcc-8004.1489.1at 1419.549 kb on - strand, within Xcc-8004.1489.1at 1419.549 kb on - strand, within Xcc-8004.1489.1at 1419.549 kb on - strand, within Xcc-8004.1489.1at 1419.549 kb on - strand, within Xcc-8004.1489.1at 1419.755 kb on + strand, within Xcc-8004.1489.1at 1419.827 kb on + strand, within Xcc-8004.1489.1at 1419.827 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.237 kb on + strand, within Xcc-8004.1489.1at 1420.238 kb on - strand, within Xcc-8004.1489.1at 1420.598 kb on + strandat 1420.598 kb on + strandat 1420.598 kb on + strandat 1420.599 kb on - strandat 1420.599 kb on - strandat 1420.703 kb on - strandat 1421.305 kb on + strand, within Xcc-8004.1490.1at 1421.305 kb on + strand, within Xcc-8004.1490.1at 1421.305 kb on + strand, within Xcc-8004.1490.1at 1421.306 kb on - strand, within Xcc-8004.1490.1at 1421.306 kb on - strand, within Xcc-8004.1490.1at 1421.306 kb on - strand, within Xcc-8004.1490.1at 1421.455 kb on + strand, within Xcc-8004.1490.1at 1421.497 kb on + strand, within Xcc-8004.1490.1at 1421.651 kb on - strand, within Xcc-8004.1490.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,417,486 + Xcc-8004.1488.1 0.36 -0.3
1,417,486 + Xcc-8004.1488.1 0.36 +1.1
1,417,487 - Xcc-8004.1488.1 0.36 +0.5
1,417,575 - Xcc-8004.1488.1 0.46 -0.5
1,417,641 - Xcc-8004.1488.1 0.53 -0.0
1,417,669 + Xcc-8004.1488.1 0.56 -0.5
1,417,938 - Xcc-8004.1488.1 0.86 +0.5
1,417,949 + Xcc-8004.1488.1 0.88 +0.2
1,418,071 + +1.1
1,418,071 + +0.1
1,418,072 - +0.4
1,418,072 - +0.4
1,418,072 - +0.5
1,418,146 + -0.5
1,418,146 + -0.3
1,418,181 + -1.3
1,418,181 + +0.6
1,418,182 - -2.4
1,418,182 - -0.7
1,418,213 - +0.6
1,418,213 - +0.1
1,418,233 - -0.5
1,418,233 - +0.6
1,418,274 + -0.2
1,418,274 + -0.4
1,418,274 + -0.3
1,418,274 + -0.1
1,418,275 - -0.0
1,418,275 - -1.0
1,418,275 - +0.7
1,418,275 - -0.5
1,418,275 - -0.2
1,418,298 + +0.4
1,418,298 + +0.0
1,418,309 + +0.9
1,418,309 + +0.7
1,418,310 - -0.2
1,418,310 - +1.1
1,418,394 + -0.0
1,418,394 + +0.4
1,418,394 + -2.0
1,418,464 + -0.3
1,418,465 - +0.6
1,418,469 + +1.8
1,418,469 + +1.5
1,418,469 + -0.1
1,418,470 - -3.0
1,418,470 - +0.2
1,418,470 - +0.0
1,418,470 - -0.3
1,418,732 - Xcc-8004.1489.1 0.16 +1.5
1,418,743 - Xcc-8004.1489.1 0.17 +0.0
1,418,869 + Xcc-8004.1489.1 0.22 -1.3
1,418,869 + Xcc-8004.1489.1 0.22 -2.0
1,418,869 + Xcc-8004.1489.1 0.22 +0.4
1,418,869 + Xcc-8004.1489.1 0.22 +0.1
1,418,869 + Xcc-8004.1489.1 0.22 +0.6
1,418,869 + Xcc-8004.1489.1 0.22 +0.8
1,418,869 + Xcc-8004.1489.1 0.22 -0.3
1,418,870 - Xcc-8004.1489.1 0.22 +0.3
1,418,870 - Xcc-8004.1489.1 0.22 -0.1
1,418,872 + Xcc-8004.1489.1 0.22 -1.0
1,418,873 - Xcc-8004.1489.1 0.22 -1.0
1,418,958 + Xcc-8004.1489.1 0.26 -0.2
1,418,959 - Xcc-8004.1489.1 0.26 +1.0
1,418,959 - Xcc-8004.1489.1 0.26 +0.3
1,418,959 - Xcc-8004.1489.1 0.26 -0.6
1,419,107 - Xcc-8004.1489.1 0.32 -0.7
1,419,107 - Xcc-8004.1489.1 0.32 +0.9
1,419,161 + Xcc-8004.1489.1 0.35 +1.1
1,419,161 + Xcc-8004.1489.1 0.35 +1.0
1,419,161 + Xcc-8004.1489.1 0.35 -0.3
1,419,161 + Xcc-8004.1489.1 0.35 -0.3
1,419,162 - Xcc-8004.1489.1 0.35 -0.3
1,419,162 - Xcc-8004.1489.1 0.35 -0.2
1,419,162 - Xcc-8004.1489.1 0.35 -0.3
1,419,248 + Xcc-8004.1489.1 0.38 +0.5
1,419,248 + Xcc-8004.1489.1 0.38 +1.4
1,419,248 + Xcc-8004.1489.1 0.38 -1.5
1,419,248 + Xcc-8004.1489.1 0.38 +0.4
1,419,248 + Xcc-8004.1489.1 0.38 -0.1
1,419,248 + Xcc-8004.1489.1 0.38 -0.8
1,419,249 - Xcc-8004.1489.1 0.38 +1.0
1,419,249 - Xcc-8004.1489.1 0.38 +0.5
1,419,249 - Xcc-8004.1489.1 0.38 -0.7
1,419,249 - Xcc-8004.1489.1 0.38 -1.1
1,419,249 - Xcc-8004.1489.1 0.38 -0.2
1,419,249 - Xcc-8004.1489.1 0.38 -0.3
1,419,299 + Xcc-8004.1489.1 0.41 +0.9
1,419,347 + Xcc-8004.1489.1 0.43 +0.2
1,419,348 - Xcc-8004.1489.1 0.43 -0.9
1,419,348 - Xcc-8004.1489.1 0.43 +0.8
1,419,348 - Xcc-8004.1489.1 0.43 -0.4
1,419,348 - Xcc-8004.1489.1 0.43 +0.3
1,419,348 - Xcc-8004.1489.1 0.43 +0.0
1,419,348 - Xcc-8004.1489.1 0.43 -0.7
1,419,407 + Xcc-8004.1489.1 0.45 +0.5
1,419,407 + Xcc-8004.1489.1 0.45 +0.2
1,419,407 + Xcc-8004.1489.1 0.45 -1.3
1,419,408 - Xcc-8004.1489.1 0.45 +0.6
1,419,408 - Xcc-8004.1489.1 0.45 +0.6
1,419,408 - Xcc-8004.1489.1 0.45 -0.3
1,419,408 - Xcc-8004.1489.1 0.45 +0.5
1,419,435 - Xcc-8004.1489.1 0.46 +0.2
1,419,448 + Xcc-8004.1489.1 0.47 +0.6
1,419,449 - Xcc-8004.1489.1 0.47 +1.7
1,419,449 - Xcc-8004.1489.1 0.47 +0.5
1,419,548 + Xcc-8004.1489.1 0.51 +0.1
1,419,548 + Xcc-8004.1489.1 0.51 -2.3
1,419,548 + Xcc-8004.1489.1 0.51 +0.3
1,419,549 - Xcc-8004.1489.1 0.51 -0.4
1,419,549 - Xcc-8004.1489.1 0.51 -1.7
1,419,549 - Xcc-8004.1489.1 0.51 +1.1
1,419,549 - Xcc-8004.1489.1 0.51 -1.0
1,419,755 + Xcc-8004.1489.1 0.60 +1.0
1,419,827 + Xcc-8004.1489.1 0.63 -1.3
1,419,827 + Xcc-8004.1489.1 0.63 +0.0
1,420,094 + Xcc-8004.1489.1 0.75 +0.2
1,420,094 + Xcc-8004.1489.1 0.75 +1.5
1,420,094 + Xcc-8004.1489.1 0.75 -1.4
1,420,094 + Xcc-8004.1489.1 0.75 +0.1
1,420,094 + Xcc-8004.1489.1 0.75 +0.9
1,420,094 + Xcc-8004.1489.1 0.75 +1.9
1,420,094 + Xcc-8004.1489.1 0.75 -0.3
1,420,094 + Xcc-8004.1489.1 0.75 +0.1
1,420,095 - Xcc-8004.1489.1 0.75 -0.5
1,420,095 - Xcc-8004.1489.1 0.75 +1.7
1,420,095 - Xcc-8004.1489.1 0.75 -0.5
1,420,095 - Xcc-8004.1489.1 0.75 +0.8
1,420,095 - Xcc-8004.1489.1 0.75 +1.5
1,420,095 - Xcc-8004.1489.1 0.75 -0.8
1,420,095 - Xcc-8004.1489.1 0.75 +0.3
1,420,095 - Xcc-8004.1489.1 0.75 -1.6
1,420,095 - Xcc-8004.1489.1 0.75 -0.9
1,420,095 - Xcc-8004.1489.1 0.75 -0.5
1,420,095 - Xcc-8004.1489.1 0.75 +1.2
1,420,095 - Xcc-8004.1489.1 0.75 +0.3
1,420,095 - Xcc-8004.1489.1 0.75 -1.1
1,420,095 - Xcc-8004.1489.1 0.75 -0.0
1,420,237 + Xcc-8004.1489.1 0.81 +1.9
1,420,238 - Xcc-8004.1489.1 0.81 -0.1
1,420,598 + -0.7
1,420,598 + +0.3
1,420,598 + +0.6
1,420,599 - +0.7
1,420,599 - +2.1
1,420,703 - -0.7
1,421,305 + Xcc-8004.1490.1 0.36 -0.6
1,421,305 + Xcc-8004.1490.1 0.36 -0.6
1,421,305 + Xcc-8004.1490.1 0.36 +0.9
1,421,306 - Xcc-8004.1490.1 0.36 +0.4
1,421,306 - Xcc-8004.1490.1 0.36 -1.7
1,421,306 - Xcc-8004.1490.1 0.36 -0.4
1,421,455 + Xcc-8004.1490.1 0.46 -1.9
1,421,497 + Xcc-8004.1490.1 0.49 -1.1
1,421,651 - Xcc-8004.1490.1 0.59 -0.6

Or see this region's nucleotide sequence