Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1438.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1437.1 and Xcc-8004.1438.1 are separated by 2 nucleotidesXcc-8004.1438.1 and Xcc-8004.1439.1 are separated by 39 nucleotides Xcc-8004.1437.1: Xcc-8004.1437.1 - Kup system potassium uptake protein, at 1,376,058 to 1,377,965 Xcc-8004.1437.1 Xcc-8004.1438.1: Xcc-8004.1438.1 - FIG01214064: hypothetical protein, at 1,377,968 to 1,379,089 Xcc-8004.1438.1 Xcc-8004.1439.1: Xcc-8004.1439.1 - Holliday junction DNA helicase RuvB, at 1,379,129 to 1,380,169 Xcc-8004.1439.1 Position (kb) 1377 1378 1379 1380Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1377.009 kb on - strand, within Xcc-8004.1437.1at 1377.051 kb on + strand, within Xcc-8004.1437.1at 1377.105 kb on + strand, within Xcc-8004.1437.1at 1377.106 kb on - strand, within Xcc-8004.1437.1at 1377.106 kb on - strand, within Xcc-8004.1437.1at 1377.192 kb on + strand, within Xcc-8004.1437.1at 1377.192 kb on + strand, within Xcc-8004.1437.1at 1377.192 kb on + strand, within Xcc-8004.1437.1at 1377.193 kb on - strand, within Xcc-8004.1437.1at 1377.609 kb on - strand, within Xcc-8004.1437.1at 1377.609 kb on - strand, within Xcc-8004.1437.1at 1377.693 kb on + strand, within Xcc-8004.1437.1at 1377.736 kb on + strand, within Xcc-8004.1437.1at 1377.993 kb on - strandat 1377.993 kb on - strandat 1378.127 kb on + strand, within Xcc-8004.1438.1at 1378.127 kb on + strand, within Xcc-8004.1438.1at 1378.127 kb on + strand, within Xcc-8004.1438.1at 1378.127 kb on + strand, within Xcc-8004.1438.1at 1378.127 kb on + strand, within Xcc-8004.1438.1at 1378.127 kb on + strand, within Xcc-8004.1438.1at 1378.127 kb on + strand, within Xcc-8004.1438.1at 1378.127 kb on + strand, within Xcc-8004.1438.1at 1378.128 kb on - strand, within Xcc-8004.1438.1at 1378.128 kb on - strand, within Xcc-8004.1438.1at 1378.128 kb on - strand, within Xcc-8004.1438.1at 1378.128 kb on - strand, within Xcc-8004.1438.1at 1378.128 kb on - strand, within Xcc-8004.1438.1at 1378.128 kb on - strand, within Xcc-8004.1438.1at 1378.136 kb on + strand, within Xcc-8004.1438.1at 1378.230 kb on + strand, within Xcc-8004.1438.1at 1378.231 kb on - strand, within Xcc-8004.1438.1at 1378.283 kb on + strand, within Xcc-8004.1438.1at 1378.283 kb on + strand, within Xcc-8004.1438.1at 1378.284 kb on - strand, within Xcc-8004.1438.1at 1378.284 kb on - strand, within Xcc-8004.1438.1at 1378.388 kb on + strand, within Xcc-8004.1438.1at 1378.388 kb on + strand, within Xcc-8004.1438.1at 1378.389 kb on - strand, within Xcc-8004.1438.1at 1378.389 kb on - strand, within Xcc-8004.1438.1at 1378.389 kb on - strand, within Xcc-8004.1438.1at 1378.389 kb on - strand, within Xcc-8004.1438.1at 1378.421 kb on + strand, within Xcc-8004.1438.1at 1378.421 kb on + strand, within Xcc-8004.1438.1at 1378.421 kb on + strand, within Xcc-8004.1438.1at 1378.421 kb on + strand, within Xcc-8004.1438.1at 1378.422 kb on - strand, within Xcc-8004.1438.1at 1378.422 kb on - strand, within Xcc-8004.1438.1at 1378.530 kb on - strand, within Xcc-8004.1438.1at 1378.530 kb on - strand, within Xcc-8004.1438.1at 1378.697 kb on + strand, within Xcc-8004.1438.1at 1378.697 kb on + strand, within Xcc-8004.1438.1at 1378.697 kb on + strand, within Xcc-8004.1438.1at 1378.697 kb on + strand, within Xcc-8004.1438.1at 1378.721 kb on - strand, within Xcc-8004.1438.1at 1378.766 kb on + strand, within Xcc-8004.1438.1at 1378.767 kb on - strand, within Xcc-8004.1438.1at 1378.799 kb on + strand, within Xcc-8004.1438.1at 1378.799 kb on + strand, within Xcc-8004.1438.1at 1378.799 kb on + strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.803 kb on + strand, within Xcc-8004.1438.1at 1378.804 kb on - strand, within Xcc-8004.1438.1at 1378.804 kb on - strand, within Xcc-8004.1438.1at 1378.883 kb on + strand, within Xcc-8004.1438.1at 1378.883 kb on + strand, within Xcc-8004.1438.1at 1378.883 kb on + strand, within Xcc-8004.1438.1at 1378.883 kb on + strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.976 kb on + strand, within Xcc-8004.1438.1at 1378.976 kb on + strand, within Xcc-8004.1438.1at 1378.976 kb on + strand, within Xcc-8004.1438.1at 1378.976 kb on + strand, within Xcc-8004.1438.1at 1378.977 kb on - strandat 1378.994 kb on + strandat 1378.995 kb on - strandat 1378.995 kb on - strandat 1378.995 kb on - strandat 1379.087 kb on + strandat 1379.087 kb on + strandat 1379.088 kb on - strandat 1379.088 kb on - strandat 1379.216 kb on + strandat 1379.255 kb on + strand, within Xcc-8004.1439.1at 1379.255 kb on + strand, within Xcc-8004.1439.1at 1379.256 kb on - strand, within Xcc-8004.1439.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,377,009 - Xcc-8004.1437.1 0.50 -0.4
1,377,051 + Xcc-8004.1437.1 0.52 -0.9
1,377,105 + Xcc-8004.1437.1 0.55 +0.3
1,377,106 - Xcc-8004.1437.1 0.55 +0.5
1,377,106 - Xcc-8004.1437.1 0.55 -0.1
1,377,192 + Xcc-8004.1437.1 0.59 -1.6
1,377,192 + Xcc-8004.1437.1 0.59 +2.1
1,377,192 + Xcc-8004.1437.1 0.59 +0.3
1,377,193 - Xcc-8004.1437.1 0.59 -0.6
1,377,609 - Xcc-8004.1437.1 0.81 -0.4
1,377,609 - Xcc-8004.1437.1 0.81 +1.3
1,377,693 + Xcc-8004.1437.1 0.86 -0.5
1,377,736 + Xcc-8004.1437.1 0.88 +0.7
1,377,993 - +0.4
1,377,993 - +0.3
1,378,127 + Xcc-8004.1438.1 0.14 -1.2
1,378,127 + Xcc-8004.1438.1 0.14 -0.6
1,378,127 + Xcc-8004.1438.1 0.14 -0.1
1,378,127 + Xcc-8004.1438.1 0.14 -0.1
1,378,127 + Xcc-8004.1438.1 0.14 -1.5
1,378,127 + Xcc-8004.1438.1 0.14 +0.4
1,378,127 + Xcc-8004.1438.1 0.14 +0.0
1,378,127 + Xcc-8004.1438.1 0.14 +0.8
1,378,128 - Xcc-8004.1438.1 0.14 -0.1
1,378,128 - Xcc-8004.1438.1 0.14 +1.1
1,378,128 - Xcc-8004.1438.1 0.14 -0.1
1,378,128 - Xcc-8004.1438.1 0.14 +0.2
1,378,128 - Xcc-8004.1438.1 0.14 +0.1
1,378,128 - Xcc-8004.1438.1 0.14 +0.9
1,378,136 + Xcc-8004.1438.1 0.15 +0.5
1,378,230 + Xcc-8004.1438.1 0.23 +0.2
1,378,231 - Xcc-8004.1438.1 0.23 +2.1
1,378,283 + Xcc-8004.1438.1 0.28 -0.3
1,378,283 + Xcc-8004.1438.1 0.28 -0.4
1,378,284 - Xcc-8004.1438.1 0.28 -0.5
1,378,284 - Xcc-8004.1438.1 0.28 -1.1
1,378,388 + Xcc-8004.1438.1 0.37 +0.3
1,378,388 + Xcc-8004.1438.1 0.37 +0.4
1,378,389 - Xcc-8004.1438.1 0.38 +0.9
1,378,389 - Xcc-8004.1438.1 0.38 +0.4
1,378,389 - Xcc-8004.1438.1 0.38 -1.3
1,378,389 - Xcc-8004.1438.1 0.38 -0.2
1,378,421 + Xcc-8004.1438.1 0.40 +0.6
1,378,421 + Xcc-8004.1438.1 0.40 -0.4
1,378,421 + Xcc-8004.1438.1 0.40 +0.7
1,378,421 + Xcc-8004.1438.1 0.40 -0.4
1,378,422 - Xcc-8004.1438.1 0.40 -0.5
1,378,422 - Xcc-8004.1438.1 0.40 -1.1
1,378,530 - Xcc-8004.1438.1 0.50 -0.3
1,378,530 - Xcc-8004.1438.1 0.50 -0.1
1,378,697 + Xcc-8004.1438.1 0.65 -1.8
1,378,697 + Xcc-8004.1438.1 0.65 -1.3
1,378,697 + Xcc-8004.1438.1 0.65 +0.2
1,378,697 + Xcc-8004.1438.1 0.65 -1.3
1,378,721 - Xcc-8004.1438.1 0.67 -0.1
1,378,766 + Xcc-8004.1438.1 0.71 -0.5
1,378,767 - Xcc-8004.1438.1 0.71 +0.4
1,378,799 + Xcc-8004.1438.1 0.74 +0.5
1,378,799 + Xcc-8004.1438.1 0.74 -0.0
1,378,799 + Xcc-8004.1438.1 0.74 +1.5
1,378,800 - Xcc-8004.1438.1 0.74 +0.2
1,378,800 - Xcc-8004.1438.1 0.74 +0.6
1,378,800 - Xcc-8004.1438.1 0.74 -0.4
1,378,800 - Xcc-8004.1438.1 0.74 -0.4
1,378,800 - Xcc-8004.1438.1 0.74 +0.0
1,378,803 + Xcc-8004.1438.1 0.74 -0.5
1,378,804 - Xcc-8004.1438.1 0.75 -0.4
1,378,804 - Xcc-8004.1438.1 0.75 -1.1
1,378,883 + Xcc-8004.1438.1 0.82 +0.5
1,378,883 + Xcc-8004.1438.1 0.82 +0.1
1,378,883 + Xcc-8004.1438.1 0.82 -1.4
1,378,883 + Xcc-8004.1438.1 0.82 -1.4
1,378,884 - Xcc-8004.1438.1 0.82 +0.5
1,378,884 - Xcc-8004.1438.1 0.82 -0.9
1,378,884 - Xcc-8004.1438.1 0.82 +0.1
1,378,884 - Xcc-8004.1438.1 0.82 +0.1
1,378,884 - Xcc-8004.1438.1 0.82 -2.0
1,378,884 - Xcc-8004.1438.1 0.82 -0.3
1,378,884 - Xcc-8004.1438.1 0.82 -0.5
1,378,884 - Xcc-8004.1438.1 0.82 -1.1
1,378,976 + Xcc-8004.1438.1 0.90 -0.4
1,378,976 + Xcc-8004.1438.1 0.90 +1.2
1,378,976 + Xcc-8004.1438.1 0.90 -0.1
1,378,976 + Xcc-8004.1438.1 0.90 +1.3
1,378,977 - +0.6
1,378,994 + -0.8
1,378,995 - -1.3
1,378,995 - +0.2
1,378,995 - +0.0
1,379,087 + -0.2
1,379,087 + -1.3
1,379,088 - +0.5
1,379,088 - +1.9
1,379,216 + +0.7
1,379,255 + Xcc-8004.1439.1 0.12 -0.3
1,379,255 + Xcc-8004.1439.1 0.12 +3.1
1,379,256 - Xcc-8004.1439.1 0.12 +0.3

Or see this region's nucleotide sequence