Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1434.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,372,812	+		Xcc-8004.1432.1	0.80	+0.6
1,372,812	+		Xcc-8004.1432.1	0.80	-1.5
1,372,812	+		Xcc-8004.1432.1	0.80	-1.0
1,372,813	-		Xcc-8004.1432.1	0.80	+0.8
1,372,813	-		Xcc-8004.1432.1	0.80	-0.8
1,372,813	-		Xcc-8004.1432.1	0.80	+0.8
1,372,813	-		Xcc-8004.1432.1	0.80	+0.2
1,372,813	-		Xcc-8004.1432.1	0.80	-1.7
1,372,813	-		Xcc-8004.1432.1	0.80	-0.7
1,372,822	-		Xcc-8004.1432.1	0.81	+0.1
1,372,822	-		Xcc-8004.1432.1	0.81	+0.2
1,372,881	+				-0.5
1,372,881	+				-0.4
1,372,881	+				+0.1
1,372,881	+				+0.1
1,372,881	+				-2.1
1,372,881	+				-1.2
1,372,881	+				-0.6
1,372,882	-				+1.2
1,372,882	-				-0.6
1,372,882	-				-0.1
1,372,917	+				-1.6
1,372,917	+				+0.9
1,372,917	+				-0.6
1,372,918	-				+2.6
1,373,169	+		Xcc-8004.1433.1	0.19	+0.2
1,373,170	-		Xcc-8004.1433.1	0.19	+0.4
1,373,201	-		Xcc-8004.1433.1	0.24	+1.1
1,373,276	+		Xcc-8004.1433.1	0.35	-0.6
1,373,464	-		Xcc-8004.1433.1	0.64	+0.1
1,373,628	+		Xcc-8004.1433.1	0.88	-0.2
1,373,694	+				-1.9
1,373,737	+				+0.4
1,373,784	+				+0.2
1,373,785	-				-0.1
1,374,013	+		Xcc-8004.1434.1	0.32	-1.4
1,374,014	-		Xcc-8004.1434.1	0.32	-1.3
1,374,472	+				-2.2
1,374,472	+				+0.2
1,374,472	+				-0.6
1,374,472	+				-0.7
1,374,472	+				-0.8
1,374,472	+				-1.3
1,374,472	+				-0.7
1,374,473	-				-1.0
1,374,505	+				+2.1
1,374,506	-				+0.0
1,374,597	-				-1.2
1,375,131	+				-0.1
1,375,304	+				+0.5
1,375,304	+				-0.3
1,375,305	-				-0.1
1,375,380	-		Xcc-8004.1436.1	0.18	-0.8
1,375,380	-		Xcc-8004.1436.1	0.18	-0.3
1,375,380	-		Xcc-8004.1436.1	0.18	+0.2
1,375,424	+		Xcc-8004.1436.1	0.26	+1.1
1,375,454	+		Xcc-8004.1436.1	0.31	+1.7