Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1121.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1119.1 and Xcc-8004.1120.1 overlap by 140 nucleotidesXcc-8004.1120.1 and Xcc-8004.1121.1 are separated by 215 nucleotidesXcc-8004.1121.1 and Xcc-8004.1122.1 are separated by 132 nucleotides Xcc-8004.1119.1: Xcc-8004.1119.1 - FIG01209687: hypothetical protein, at 1,064,376 to 1,064,621 Xcc-8004.1119.1 Xcc-8004.1120.1: Xcc-8004.1120.1 - putative; ORF located using Glimmer/Genemark, at 1,064,482 to 1,065,060 Xcc-8004.1120.1 Xcc-8004.1121.1: Xcc-8004.1121.1 - hypothetical protein, at 1,065,276 to 1,067,567 Xcc-8004.1121.1 Xcc-8004.1122.1: Xcc-8004.1122.1 - Flavin monoamine oxidase-related protein, at 1,067,700 to 1,069,307 Xcc-8004.1122.1 Position (kb) 1065 1066 1067 1068Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1064.317 kb on + strandat 1064.339 kb on + strandat 1064.340 kb on - strandat 1064.340 kb on - strandat 1064.343 kb on + strandat 1064.362 kb on + strandat 1064.362 kb on + strandat 1064.363 kb on - strandat 1064.363 kb on - strandat 1064.363 kb on - strandat 1064.377 kb on + strandat 1064.378 kb on - strandat 1064.539 kb on + strandat 1064.539 kb on + strandat 1064.722 kb on - strand, within Xcc-8004.1120.1at 1064.782 kb on + strand, within Xcc-8004.1120.1at 1064.807 kb on + strand, within Xcc-8004.1120.1at 1064.807 kb on + strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.838 kb on - strand, within Xcc-8004.1120.1at 1064.838 kb on - strand, within Xcc-8004.1120.1at 1064.936 kb on + strand, within Xcc-8004.1120.1at 1064.936 kb on + strand, within Xcc-8004.1120.1at 1064.936 kb on + strand, within Xcc-8004.1120.1at 1064.937 kb on - strand, within Xcc-8004.1120.1at 1064.968 kb on + strand, within Xcc-8004.1120.1at 1064.969 kb on - strand, within Xcc-8004.1120.1at 1065.107 kb on + strandat 1065.186 kb on - strandat 1065.374 kb on - strandat 1065.374 kb on - strandat 1065.576 kb on + strand, within Xcc-8004.1121.1at 1065.693 kb on + strand, within Xcc-8004.1121.1at 1065.693 kb on + strand, within Xcc-8004.1121.1at 1065.727 kb on + strand, within Xcc-8004.1121.1at 1065.727 kb on + strand, within Xcc-8004.1121.1at 1065.763 kb on - strand, within Xcc-8004.1121.1at 1065.763 kb on - strand, within Xcc-8004.1121.1at 1066.047 kb on + strand, within Xcc-8004.1121.1at 1066.048 kb on - strand, within Xcc-8004.1121.1at 1066.066 kb on - strand, within Xcc-8004.1121.1at 1066.080 kb on + strand, within Xcc-8004.1121.1at 1066.081 kb on - strand, within Xcc-8004.1121.1at 1066.081 kb on - strand, within Xcc-8004.1121.1at 1066.155 kb on + strand, within Xcc-8004.1121.1at 1066.156 kb on - strand, within Xcc-8004.1121.1at 1066.248 kb on + strand, within Xcc-8004.1121.1at 1066.249 kb on - strand, within Xcc-8004.1121.1at 1066.251 kb on + strand, within Xcc-8004.1121.1at 1066.252 kb on - strand, within Xcc-8004.1121.1at 1066.311 kb on + strand, within Xcc-8004.1121.1at 1066.311 kb on + strand, within Xcc-8004.1121.1at 1066.312 kb on - strand, within Xcc-8004.1121.1at 1066.518 kb on + strand, within Xcc-8004.1121.1at 1066.545 kb on + strand, within Xcc-8004.1121.1at 1066.603 kb on - strand, within Xcc-8004.1121.1at 1066.605 kb on + strand, within Xcc-8004.1121.1at 1066.641 kb on + strand, within Xcc-8004.1121.1at 1066.641 kb on + strand, within Xcc-8004.1121.1at 1066.642 kb on - strand, within Xcc-8004.1121.1at 1066.723 kb on - strand, within Xcc-8004.1121.1at 1066.723 kb on - strand, within Xcc-8004.1121.1at 1066.857 kb on + strand, within Xcc-8004.1121.1at 1066.858 kb on - strand, within Xcc-8004.1121.1at 1066.858 kb on - strand, within Xcc-8004.1121.1at 1066.999 kb on - strand, within Xcc-8004.1121.1at 1067.098 kb on - strand, within Xcc-8004.1121.1at 1067.191 kb on - strand, within Xcc-8004.1121.1at 1067.191 kb on - strand, within Xcc-8004.1121.1at 1067.319 kb on + strand, within Xcc-8004.1121.1at 1067.451 kb on + strandat 1067.781 kb on + strandat 1067.781 kb on + strandat 1067.781 kb on + strandat 1067.782 kb on - strandat 1067.782 kb on - strandat 1067.782 kb on - strandat 1067.782 kb on - strandat 1067.952 kb on + strand, within Xcc-8004.1122.1at 1067.953 kb on - strand, within Xcc-8004.1122.1at 1068.054 kb on + strand, within Xcc-8004.1122.1at 1068.054 kb on + strand, within Xcc-8004.1122.1at 1068.055 kb on - strand, within Xcc-8004.1122.1at 1068.157 kb on - strand, within Xcc-8004.1122.1at 1068.157 kb on - strand, within Xcc-8004.1122.1at 1068.364 kb on - strand, within Xcc-8004.1122.1at 1068.364 kb on - strand, within Xcc-8004.1122.1at 1068.514 kb on - strand, within Xcc-8004.1122.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,064,317 + +0.6
1,064,339 + -0.2
1,064,340 - -0.2
1,064,340 - -0.6
1,064,343 + +0.7
1,064,362 + +0.2
1,064,362 + -1.4
1,064,363 - +0.1
1,064,363 - -0.1
1,064,363 - -1.6
1,064,377 + +0.1
1,064,378 - +0.2
1,064,539 + -0.1
1,064,539 + -0.1
1,064,722 - Xcc-8004.1120.1 0.41 -0.5
1,064,782 + Xcc-8004.1120.1 0.52 +2.1
1,064,807 + Xcc-8004.1120.1 0.56 +0.1
1,064,807 + Xcc-8004.1120.1 0.56 -2.6
1,064,808 - Xcc-8004.1120.1 0.56 -0.4
1,064,808 - Xcc-8004.1120.1 0.56 +0.5
1,064,808 - Xcc-8004.1120.1 0.56 -1.9
1,064,808 - Xcc-8004.1120.1 0.56 -0.2
1,064,808 - Xcc-8004.1120.1 0.56 +1.8
1,064,838 - Xcc-8004.1120.1 0.61 +0.9
1,064,838 - Xcc-8004.1120.1 0.61 +2.1
1,064,936 + Xcc-8004.1120.1 0.78 +0.7
1,064,936 + Xcc-8004.1120.1 0.78 -0.0
1,064,936 + Xcc-8004.1120.1 0.78 -2.4
1,064,937 - Xcc-8004.1120.1 0.79 +1.4
1,064,968 + Xcc-8004.1120.1 0.84 -1.1
1,064,969 - Xcc-8004.1120.1 0.84 -0.4
1,065,107 + +0.0
1,065,186 - -0.0
1,065,374 - -0.2
1,065,374 - +0.0
1,065,576 + Xcc-8004.1121.1 0.13 -0.6
1,065,693 + Xcc-8004.1121.1 0.18 +0.6
1,065,693 + Xcc-8004.1121.1 0.18 +0.1
1,065,727 + Xcc-8004.1121.1 0.20 +1.4
1,065,727 + Xcc-8004.1121.1 0.20 +0.2
1,065,763 - Xcc-8004.1121.1 0.21 -1.7
1,065,763 - Xcc-8004.1121.1 0.21 -0.1
1,066,047 + Xcc-8004.1121.1 0.34 +0.3
1,066,048 - Xcc-8004.1121.1 0.34 -0.5
1,066,066 - Xcc-8004.1121.1 0.34 +0.9
1,066,080 + Xcc-8004.1121.1 0.35 -0.8
1,066,081 - Xcc-8004.1121.1 0.35 -0.3
1,066,081 - Xcc-8004.1121.1 0.35 +1.5
1,066,155 + Xcc-8004.1121.1 0.38 +1.0
1,066,156 - Xcc-8004.1121.1 0.38 +1.2
1,066,248 + Xcc-8004.1121.1 0.42 +0.2
1,066,249 - Xcc-8004.1121.1 0.42 +0.1
1,066,251 + Xcc-8004.1121.1 0.43 -0.6
1,066,252 - Xcc-8004.1121.1 0.43 -0.7
1,066,311 + Xcc-8004.1121.1 0.45 +0.4
1,066,311 + Xcc-8004.1121.1 0.45 -1.5
1,066,312 - Xcc-8004.1121.1 0.45 +0.9
1,066,518 + Xcc-8004.1121.1 0.54 +0.4
1,066,545 + Xcc-8004.1121.1 0.55 -0.8
1,066,603 - Xcc-8004.1121.1 0.58 +0.5
1,066,605 + Xcc-8004.1121.1 0.58 -2.6
1,066,641 + Xcc-8004.1121.1 0.60 -0.4
1,066,641 + Xcc-8004.1121.1 0.60 +0.0
1,066,642 - Xcc-8004.1121.1 0.60 +0.7
1,066,723 - Xcc-8004.1121.1 0.63 -0.8
1,066,723 - Xcc-8004.1121.1 0.63 +0.6
1,066,857 + Xcc-8004.1121.1 0.69 -0.6
1,066,858 - Xcc-8004.1121.1 0.69 +1.8
1,066,858 - Xcc-8004.1121.1 0.69 -0.9
1,066,999 - Xcc-8004.1121.1 0.75 +3.1
1,067,098 - Xcc-8004.1121.1 0.79 +0.3
1,067,191 - Xcc-8004.1121.1 0.84 -1.6
1,067,191 - Xcc-8004.1121.1 0.84 +0.1
1,067,319 + Xcc-8004.1121.1 0.89 +0.4
1,067,451 + -0.2
1,067,781 + +0.7
1,067,781 + -0.2
1,067,781 + +0.3
1,067,782 - +0.1
1,067,782 - -0.9
1,067,782 - -0.5
1,067,782 - +0.1
1,067,952 + Xcc-8004.1122.1 0.16 -1.5
1,067,953 - Xcc-8004.1122.1 0.16 -0.5
1,068,054 + Xcc-8004.1122.1 0.22 -1.2
1,068,054 + Xcc-8004.1122.1 0.22 +0.3
1,068,055 - Xcc-8004.1122.1 0.22 +1.1
1,068,157 - Xcc-8004.1122.1 0.28 -1.3
1,068,157 - Xcc-8004.1122.1 0.28 +1.5
1,068,364 - Xcc-8004.1122.1 0.41 -0.3
1,068,364 - Xcc-8004.1122.1 0.41 +3.1
1,068,514 - Xcc-8004.1122.1 0.51 -0.2

Or see this region's nucleotide sequence