Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1104.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,049,501	+		Xcc-8004.1102.1	0.77	+0.1
1,049,502	-		Xcc-8004.1102.1	0.77	+0.2
1,049,583	-				-0.2
1,049,583	-				-0.4
1,049,583	-				-0.4
1,049,596	+				+2.4
1,049,597	-				+0.6
1,049,621	+				-0.6
1,049,681	+		Xcc-8004.1103.1	0.23	-0.6
1,049,681	+		Xcc-8004.1103.1	0.23	+0.4
1,049,681	+		Xcc-8004.1103.1	0.23	+0.1
1,049,681	+		Xcc-8004.1103.1	0.23	+0.6
1,049,681	+		Xcc-8004.1103.1	0.23	-2.3
1,049,681	+		Xcc-8004.1103.1	0.23	-1.0
1,049,681	+		Xcc-8004.1103.1	0.23	+0.1
1,049,682	-		Xcc-8004.1103.1	0.23	-0.3
1,049,682	-		Xcc-8004.1103.1	0.23	+0.7
1,049,682	-		Xcc-8004.1103.1	0.23	+1.0
1,049,682	-		Xcc-8004.1103.1	0.23	-0.0
1,049,682	-		Xcc-8004.1103.1	0.23	+0.3
1,049,702	+		Xcc-8004.1103.1	0.30	-0.5
1,049,702	+		Xcc-8004.1103.1	0.30	+1.1
1,049,703	-		Xcc-8004.1103.1	0.31	-0.2
1,049,745	-		Xcc-8004.1103.1	0.46	+0.4
1,049,745	-		Xcc-8004.1103.1	0.46	-1.3
1,049,754	+		Xcc-8004.1103.1	0.50	+0.1
1,049,828	-		Xcc-8004.1103.1	0.77	+1.2
1,049,828	-		Xcc-8004.1103.1	0.77	-0.1
1,049,881	+				-1.2
1,049,916	-				-0.2
1,049,993	+				-0.0
1,049,995	+				-1.0
1,049,996	-				+0.4
1,049,996	-				+0.4
1,050,112	-				+0.9
1,050,112	-				-2.6
1,050,154	+				-2.4
1,050,155	-				-1.6
1,050,155	-				+0.5
1,050,166	+				-1.8
1,050,167	-				+0.5
1,050,177	+				+1.5
1,050,177	+				-0.3
1,050,185	+				-0.4
1,050,185	+				-0.3
1,050,186	-				+0.1
1,050,186	-				-1.2
1,050,233	+				-1.2
1,050,233	+				+0.6
1,050,233	+				+0.2
1,050,234	-				-1.5
1,050,238	+				-0.5
1,050,239	-				+0.0
1,050,250	+				-0.4
1,050,311	+				+0.1
1,050,311	+				+1.1
1,050,311	+				+0.7
1,050,311	+				+0.1
1,050,312	-				+0.4
1,050,312	-				-0.4
1,050,525	+				-2.2
1,050,525	+				+0.3
1,050,525	+				+0.8
1,050,525	+				-0.3
1,050,525	+				+0.1
1,050,525	+				-0.3
1,050,525	+				+0.1
1,050,525	+				-0.3
1,050,525	+				-0.2
1,050,526	-				-1.0
1,050,526	-				+0.4
1,050,549	+				+0.3
1,050,550	-				-0.6
1,050,588	+				-0.1
1,050,588	+				-0.1
1,050,637	+		Xcc-8004.1104.1	0.13	+1.7
1,050,637	+		Xcc-8004.1104.1	0.13	-0.1
1,050,637	+		Xcc-8004.1104.1	0.13	-1.0
1,050,637	+		Xcc-8004.1104.1	0.13	-0.4
1,050,637	+		Xcc-8004.1104.1	0.13	-0.4
1,050,637	+		Xcc-8004.1104.1	0.13	+0.5
1,050,638	-		Xcc-8004.1104.1	0.13	+0.2
1,050,638	-		Xcc-8004.1104.1	0.13	-0.9
1,050,762	+		Xcc-8004.1104.1	0.23	+0.1
1,050,762	+		Xcc-8004.1104.1	0.23	+0.3
1,050,762	+		Xcc-8004.1104.1	0.23	+0.4
1,050,762	+		Xcc-8004.1104.1	0.23	+0.6
1,050,762	+		Xcc-8004.1104.1	0.23	+0.5
1,050,762	+		Xcc-8004.1104.1	0.23	+0.5
1,050,763	-		Xcc-8004.1104.1	0.23	-0.6
1,050,763	-		Xcc-8004.1104.1	0.23	+0.6
1,050,839	+		Xcc-8004.1104.1	0.29	+0.2
1,050,839	+		Xcc-8004.1104.1	0.29	+0.9
1,050,839	+		Xcc-8004.1104.1	0.29	-0.1
1,050,839	+		Xcc-8004.1104.1	0.29	+2.1
1,050,840	-		Xcc-8004.1104.1	0.29	-0.3
1,050,840	-		Xcc-8004.1104.1	0.29	+0.5
1,050,843	+		Xcc-8004.1104.1	0.30	+0.1
1,050,843	+		Xcc-8004.1104.1	0.30	-0.1
1,050,844	-		Xcc-8004.1104.1	0.30	-0.2
1,050,870	+		Xcc-8004.1104.1	0.32	-1.6
1,050,880	-		Xcc-8004.1104.1	0.33	-0.2
1,051,176	+		Xcc-8004.1104.1	0.56	+1.5
1,051,176	+		Xcc-8004.1104.1	0.56	+0.9
1,051,176	+		Xcc-8004.1104.1	0.56	-0.8
1,051,177	-		Xcc-8004.1104.1	0.56	-0.5
1,051,251	+		Xcc-8004.1104.1	0.62	-0.2
1,051,251	+		Xcc-8004.1104.1	0.62	-0.9
1,051,251	+		Xcc-8004.1104.1	0.62	+0.8
1,051,251	+		Xcc-8004.1104.1	0.62	+0.9
1,051,407	+		Xcc-8004.1104.1	0.75	-0.8
1,051,407	+		Xcc-8004.1104.1	0.75	-0.0
1,051,408	-		Xcc-8004.1104.1	0.75	+1.2
1,051,408	-		Xcc-8004.1104.1	0.75	-1.3
1,051,408	-		Xcc-8004.1104.1	0.75	+0.2
1,051,408	-		Xcc-8004.1104.1	0.75	-0.5
1,051,458	+		Xcc-8004.1104.1	0.79	+0.1
1,051,459	-		Xcc-8004.1104.1	0.79	+0.1
1,051,494	+		Xcc-8004.1104.1	0.81	+1.1
1,051,495	-		Xcc-8004.1104.1	0.82	+1.9
1,051,704	+				-0.7
1,051,704	+				+1.2
1,051,704	+				+0.1
1,051,704	+				+0.5
1,051,704	+				+0.5
1,051,704	+				-1.5
1,051,704	+				-0.8
1,051,705	-				-0.5
1,051,705	-				+0.2
1,051,705	-				+0.3
1,051,705	-				-1.3
1,051,705	-				-0.3
1,051,705	-				+0.2
1,051,705	-				+0.6
1,051,705	-				-0.5
1,051,705	-				+0.2
1,051,705	-				-0.8
1,051,705	-				-1.4
1,051,726	+				+0.5
1,051,727	-				-0.8
1,051,727	-				+0.9
1,051,727	-				+0.8
1,051,727	-				-2.1
1,051,809	+				+1.2
1,051,809	+				+0.5
1,051,809	+				-0.4
1,051,838	+				+0.5
1,052,553	+				-0.1
1,052,553	+				-0.7
1,052,553	+				+0.3
1,052,553	+				-0.6
1,052,554	-				-1.7
1,052,585	-				+0.4
1,052,644	+				-1.2
1,052,644	+				-0.2
1,052,645	-				+0.2
1,052,645	-				-0.4
1,052,645	-				-0.0
1,052,679	+				-0.0
1,052,679	+				+0.5
1,052,679	+				-0.0
1,052,695	+				+0.6
1,052,696	-				-2.0
1,052,696	-				+0.1
1,052,705	+				+1.6