Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04470

Experiment: N2 fixation, H2 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04465 and MMP_RS04470 are separated by 17 nucleotidesMMP_RS04470 and MMP_RS04475 overlap by 35 nucleotidesMMP_RS04475 and MMP_RS04480 are separated by 575 nucleotides MMP_RS04465: MMP_RS04465 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 848,539 to 849,981 _RS04465 MMP_RS04470: MMP_RS04470 - nitrogenase, at 849,999 to 851,375 _RS04470 MMP_RS04475: MMP_RS04475 - nitrogen fixation, at 851,341 to 851,661 _RS04475 MMP_RS04480: MMP_RS04480 - lysine 2 3-aminomutase, at 852,237 to 853,538 _RS04480 Position (kb) 849 850 851 852Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 849.013 kb on + strand, within MMP_RS04465at 849.270 kb on + strand, within MMP_RS04465at 849.361 kb on + strand, within MMP_RS04465at 849.363 kb on + strand, within MMP_RS04465at 849.388 kb on - strand, within MMP_RS04465at 849.463 kb on + strand, within MMP_RS04465at 849.555 kb on - strand, within MMP_RS04465at 849.594 kb on - strand, within MMP_RS04465at 849.595 kb on + strand, within MMP_RS04465at 849.609 kb on + strand, within MMP_RS04465at 849.610 kb on - strand, within MMP_RS04465at 849.610 kb on - strand, within MMP_RS04465at 849.642 kb on + strand, within MMP_RS04465at 849.673 kb on + strand, within MMP_RS04465at 849.746 kb on - strand, within MMP_RS04465at 849.746 kb on - strand, within MMP_RS04465at 849.747 kb on + strand, within MMP_RS04465at 849.747 kb on + strand, within MMP_RS04465at 849.779 kb on - strand, within MMP_RS04465at 849.779 kb on - strand, within MMP_RS04465at 849.780 kb on + strand, within MMP_RS04465at 849.810 kb on + strand, within MMP_RS04465at 849.810 kb on + strand, within MMP_RS04465at 849.810 kb on + strand, within MMP_RS04465at 849.812 kb on - strand, within MMP_RS04465at 849.812 kb on - strand, within MMP_RS04465at 849.935 kb on - strandat 849.935 kb on - strandat 849.935 kb on - strandat 849.936 kb on + strandat 849.996 kb on + strandat 849.999 kb on + strandat 850.061 kb on + strandat 850.126 kb on + strandat 850.126 kb on + strandat 850.204 kb on - strand, within MMP_RS04470at 850.207 kb on - strand, within MMP_RS04470at 850.207 kb on - strand, within MMP_RS04470at 850.270 kb on - strand, within MMP_RS04470at 850.283 kb on - strand, within MMP_RS04470at 850.284 kb on + strand, within MMP_RS04470at 850.284 kb on + strand, within MMP_RS04470at 850.360 kb on - strand, within MMP_RS04470at 850.394 kb on - strand, within MMP_RS04470at 850.395 kb on + strand, within MMP_RS04470at 850.395 kb on + strand, within MMP_RS04470at 850.395 kb on + strand, within MMP_RS04470at 850.400 kb on - strand, within MMP_RS04470at 850.401 kb on + strand, within MMP_RS04470at 850.408 kb on - strand, within MMP_RS04470at 850.408 kb on - strand, within MMP_RS04470at 850.408 kb on - strand, within MMP_RS04470at 850.409 kb on + strand, within MMP_RS04470at 850.409 kb on + strand, within MMP_RS04470at 850.480 kb on - strand, within MMP_RS04470at 850.481 kb on + strand, within MMP_RS04470at 850.553 kb on + strand, within MMP_RS04470at 850.562 kb on + strand, within MMP_RS04470at 850.586 kb on - strand, within MMP_RS04470at 850.587 kb on + strand, within MMP_RS04470at 850.587 kb on + strand, within MMP_RS04470at 850.637 kb on - strand, within MMP_RS04470at 850.805 kb on - strand, within MMP_RS04470at 850.838 kb on + strand, within MMP_RS04470at 850.841 kb on - strand, within MMP_RS04470at 850.841 kb on - strand, within MMP_RS04470at 850.934 kb on + strand, within MMP_RS04470at 851.032 kb on - strand, within MMP_RS04470at 851.037 kb on + strand, within MMP_RS04470at 851.052 kb on + strand, within MMP_RS04470at 851.066 kb on + strand, within MMP_RS04470at 851.126 kb on + strand, within MMP_RS04470at 851.180 kb on - strand, within MMP_RS04470at 851.199 kb on - strand, within MMP_RS04470at 851.205 kb on + strand, within MMP_RS04470at 851.239 kb on + strandat 851.240 kb on - strandat 851.241 kb on + strandat 851.260 kb on - strandat 851.261 kb on + strandat 851.264 kb on - strandat 851.264 kb on - strandat 851.264 kb on - strandat 851.267 kb on - strandat 851.268 kb on + strandat 851.268 kb on + strandat 851.269 kb on - strandat 851.269 kb on - strandat 851.276 kb on - strandat 851.293 kb on + strandat 851.382 kb on + strand, within MMP_RS04475at 851.382 kb on + strand, within MMP_RS04475at 851.444 kb on - strand, within MMP_RS04475at 851.484 kb on - strand, within MMP_RS04475at 851.486 kb on - strand, within MMP_RS04475at 851.513 kb on + strand, within MMP_RS04475at 851.934 kb on - strandat 851.944 kb on - strandat 851.945 kb on + strandat 851.957 kb on + strandat 851.966 kb on - strandat 851.971 kb on - strandat 851.972 kb on + strandat 851.975 kb on - strandat 851.976 kb on + strandat 851.976 kb on + strandat 851.976 kb on + strandat 851.998 kb on - strandat 852.002 kb on - strandat 852.041 kb on - strandat 852.046 kb on - strandat 852.051 kb on - strandat 852.051 kb on - strandat 852.051 kb on - strandat 852.051 kb on - strandat 852.054 kb on + strandat 852.056 kb on - strandat 852.057 kb on + strandat 852.057 kb on + strandat 852.074 kb on + strandat 852.102 kb on - strandat 852.102 kb on - strandat 852.103 kb on + strandat 852.105 kb on + strandat 852.179 kb on - strandat 852.180 kb on + strandat 852.247 kb on - strandat 852.248 kb on + strandat 852.260 kb on - strandat 852.265 kb on - strandat 852.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N2 fixation, H2 media
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849,013 + MMP_RS04465 0.33 -4.3
849,270 + MMP_RS04465 0.51 -4.5
849,361 + MMP_RS04465 0.57 -5.6
849,363 + MMP_RS04465 0.57 -4.1
849,388 - MMP_RS04465 0.59 -5.8
849,463 + MMP_RS04465 0.64 -5.0
849,555 - MMP_RS04465 0.70 -3.9
849,594 - MMP_RS04465 0.73 -5.9
849,595 + MMP_RS04465 0.73 -4.9
849,609 + MMP_RS04465 0.74 -5.7
849,610 - MMP_RS04465 0.74 -4.7
849,610 - MMP_RS04465 0.74 -4.5
849,642 + MMP_RS04465 0.76 -3.8
849,673 + MMP_RS04465 0.79 -5.0
849,746 - MMP_RS04465 0.84 -4.8
849,746 - MMP_RS04465 0.84 -5.5
849,747 + MMP_RS04465 0.84 -5.3
849,747 + MMP_RS04465 0.84 -3.9
849,779 - MMP_RS04465 0.86 -3.5
849,779 - MMP_RS04465 0.86 -4.7
849,780 + MMP_RS04465 0.86 -4.1
849,810 + MMP_RS04465 0.88 -4.2
849,810 + MMP_RS04465 0.88 -4.2
849,810 + MMP_RS04465 0.88 -3.6
849,812 - MMP_RS04465 0.88 -4.1
849,812 - MMP_RS04465 0.88 -5.3
849,935 - -4.8
849,935 - -5.0
849,935 - -4.9
849,936 + -4.5
849,996 + -4.4
849,999 + -4.7
850,061 + -4.8
850,126 + -3.3
850,126 + -4.4
850,204 - MMP_RS04470 0.15 -4.0
850,207 - MMP_RS04470 0.15 -5.5
850,207 - MMP_RS04470 0.15 -5.1
850,270 - MMP_RS04470 0.20 -4.7
850,283 - MMP_RS04470 0.21 -6.1
850,284 + MMP_RS04470 0.21 -6.1
850,284 + MMP_RS04470 0.21 -4.4
850,360 - MMP_RS04470 0.26 -5.3
850,394 - MMP_RS04470 0.29 -4.5
850,395 + MMP_RS04470 0.29 -3.9
850,395 + MMP_RS04470 0.29 -5.2
850,395 + MMP_RS04470 0.29 -4.6
850,400 - MMP_RS04470 0.29 -5.4
850,401 + MMP_RS04470 0.29 -4.2
850,408 - MMP_RS04470 0.30 -5.0
850,408 - MMP_RS04470 0.30 -5.1
850,408 - MMP_RS04470 0.30 -4.0
850,409 + MMP_RS04470 0.30 -4.0
850,409 + MMP_RS04470 0.30 -4.7
850,480 - MMP_RS04470 0.35 -4.7
850,481 + MMP_RS04470 0.35 -1.3
850,553 + MMP_RS04470 0.40 -4.6
850,562 + MMP_RS04470 0.41 -4.3
850,586 - MMP_RS04470 0.43 -5.3
850,587 + MMP_RS04470 0.43 -4.0
850,587 + MMP_RS04470 0.43 -2.7
850,637 - MMP_RS04470 0.46 -5.0
850,805 - MMP_RS04470 0.59 -3.5
850,838 + MMP_RS04470 0.61 -6.4
850,841 - MMP_RS04470 0.61 -4.6
850,841 - MMP_RS04470 0.61 -4.8
850,934 + MMP_RS04470 0.68 -4.1
851,032 - MMP_RS04470 0.75 -4.2
851,037 + MMP_RS04470 0.75 -5.0
851,052 + MMP_RS04470 0.76 -3.7
851,066 + MMP_RS04470 0.77 -5.2
851,126 + MMP_RS04470 0.82 -5.0
851,180 - MMP_RS04470 0.86 -5.9
851,199 - MMP_RS04470 0.87 -4.9
851,205 + MMP_RS04470 0.88 -4.0
851,239 + -3.0
851,240 - -5.0
851,241 + -5.8
851,260 - -4.1
851,261 + -4.5
851,264 - -3.9
851,264 - -5.2
851,264 - -5.4
851,267 - -7.3
851,268 + -5.1
851,268 + -4.1
851,269 - -3.9
851,269 - -4.8
851,276 - -1.6
851,293 + -1.3
851,382 + MMP_RS04475 0.13 -1.3
851,382 + MMP_RS04475 0.13 -0.2
851,444 - MMP_RS04475 0.32 -0.7
851,484 - MMP_RS04475 0.45 +0.0
851,486 - MMP_RS04475 0.45 -0.4
851,513 + MMP_RS04475 0.54 -0.1
851,934 - +0.0
851,944 - +0.2
851,945 + +0.9
851,957 + -0.1
851,966 - -0.8
851,971 - -0.4
851,972 + +0.1
851,975 - -0.9
851,976 + -1.0
851,976 + -0.6
851,976 + -0.4
851,998 - +0.3
852,002 - +0.3
852,041 - -0.5
852,046 - +0.3
852,051 - +0.6
852,051 - -0.1
852,051 - -1.2
852,051 - +0.1
852,054 + -0.0
852,056 - -0.0
852,057 + +0.7
852,057 + +0.1
852,074 + +0.3
852,102 - +0.4
852,102 - -0.1
852,103 + -1.3
852,105 + +0.2
852,179 - -0.7
852,180 + +0.1
852,247 - +0.1
852,248 + +0.2
852,260 - +0.4
852,265 - -1.3
852,319 + -1.0

Or see this region's nucleotide sequence