Experiment: N2 fixation, H2 media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02670 and MMP_RS02675 are separated by 16 nucleotides MMP_RS02675 and MMP_RS02680 overlap by 14 nucleotides MMP_RS02680 and MMP_RS02685 are separated by 13 nucleotides
MMP_RS02670: MMP_RS02670 - ATP-binding cassette domain-containing protein, at 508,346 to 509,377
_RS02670
MMP_RS02675: MMP_RS02675 - hypothetical protein, at 509,394 to 510,107
_RS02675
MMP_RS02680: MMP_RS02680 - ABC transporter permease, at 510,094 to 510,894
_RS02680
MMP_RS02685: MMP_RS02685 - molybdate ABC transporter substrate-binding protein, at 510,908 to 511,690
_RS02685
Position (kb) 509
510
511 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 508.448 kb on - strand at 508.448 kb on - strand at 508.449 kb on + strand at 508.449 kb on + strand at 508.523 kb on - strand, within MMP_RS02670 at 508.558 kb on - strand, within MMP_RS02670 at 508.558 kb on - strand, within MMP_RS02670 at 508.645 kb on + strand, within MMP_RS02670 at 508.730 kb on - strand, within MMP_RS02670 at 508.754 kb on + strand, within MMP_RS02670 at 508.761 kb on + strand, within MMP_RS02670 at 508.761 kb on + strand, within MMP_RS02670 at 508.778 kb on - strand, within MMP_RS02670 at 508.779 kb on + strand, within MMP_RS02670 at 508.832 kb on - strand, within MMP_RS02670 at 508.833 kb on + strand, within MMP_RS02670 at 508.835 kb on + strand, within MMP_RS02670 at 508.869 kb on + strand, within MMP_RS02670 at 508.875 kb on - strand, within MMP_RS02670 at 508.895 kb on - strand, within MMP_RS02670 at 508.896 kb on + strand, within MMP_RS02670 at 508.949 kb on - strand, within MMP_RS02670 at 509.047 kb on - strand, within MMP_RS02670 at 509.048 kb on + strand, within MMP_RS02670 at 509.296 kb on + strand at 509.328 kb on - strand at 509.328 kb on - strand at 509.329 kb on + strand at 509.369 kb on - strand at 509.369 kb on - strand at 509.378 kb on - strand at 509.379 kb on + strand at 509.383 kb on + strand at 509.495 kb on + strand, within MMP_RS02675 at 509.586 kb on + strand, within MMP_RS02675 at 509.868 kb on + strand, within MMP_RS02675 at 510.096 kb on + strand at 510.135 kb on - strand at 510.135 kb on - strand at 510.139 kb on - strand at 510.140 kb on + strand at 510.145 kb on - strand at 510.146 kb on + strand at 510.146 kb on + strand at 510.167 kb on + strand at 510.175 kb on - strand, within MMP_RS02680 at 510.448 kb on + strand, within MMP_RS02680 at 510.462 kb on - strand, within MMP_RS02680 at 510.527 kb on + strand, within MMP_RS02680 at 510.659 kb on - strand, within MMP_RS02680 at 510.706 kb on - strand, within MMP_RS02680 at 510.796 kb on - strand, within MMP_RS02680 at 510.821 kb on + strand at 510.941 kb on - strand at 511.021 kb on - strand, within MMP_RS02685 at 511.022 kb on + strand, within MMP_RS02685 at 511.039 kb on - strand, within MMP_RS02685 at 511.040 kb on + strand, within MMP_RS02685 at 511.045 kb on + strand, within MMP_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction N2 fixation, H2 media remove 508,448 - -2.7 508,448 - -3.6 508,449 + -1.4 508,449 + -3.0 508,523 - MMP_RS02670 0.17 -5.0 508,558 - MMP_RS02670 0.21 -3.2 508,558 - MMP_RS02670 0.21 -5.3 508,645 + MMP_RS02670 0.29 -4.7 508,730 - MMP_RS02670 0.37 -2.8 508,754 + MMP_RS02670 0.40 -4.0 508,761 + MMP_RS02670 0.40 -4.5 508,761 + MMP_RS02670 0.40 -4.3 508,778 - MMP_RS02670 0.42 -4.2 508,779 + MMP_RS02670 0.42 -3.8 508,832 - MMP_RS02670 0.47 -4.9 508,833 + MMP_RS02670 0.47 -3.6 508,835 + MMP_RS02670 0.47 -3.4 508,869 + MMP_RS02670 0.51 -5.4 508,875 - MMP_RS02670 0.51 -5.0 508,895 - MMP_RS02670 0.53 -4.6 508,896 + MMP_RS02670 0.53 -4.0 508,949 - MMP_RS02670 0.58 -2.7 509,047 - MMP_RS02670 0.68 -3.7 509,048 + MMP_RS02670 0.68 -5.8 509,296 + -3.8 509,328 - -3.0 509,328 - -4.7 509,329 + -5.0 509,369 - -3.1 509,369 - -3.9 509,378 - -4.0 509,379 + -4.0 509,383 + -3.2 509,495 + MMP_RS02675 0.14 -3.9 509,586 + MMP_RS02675 0.27 -3.4 509,868 + MMP_RS02675 0.66 -5.7 510,096 + -4.0 510,135 - -2.1 510,135 - -3.3 510,139 - -5.7 510,140 + -4.2 510,145 - -4.7 510,146 + -4.3 510,146 + -5.6 510,167 + -4.1 510,175 - MMP_RS02680 0.10 -2.6 510,448 + MMP_RS02680 0.44 -3.8 510,462 - MMP_RS02680 0.46 -2.9 510,527 + MMP_RS02680 0.54 -3.6 510,659 - MMP_RS02680 0.71 -3.8 510,706 - MMP_RS02680 0.76 -3.5 510,796 - MMP_RS02680 0.88 -3.1 510,821 + -4.5 510,941 - -4.7 511,021 - MMP_RS02685 0.14 -1.4 511,022 + MMP_RS02685 0.15 -3.5 511,039 - MMP_RS02685 0.17 -4.2 511,040 + MMP_RS02685 0.17 -4.0 511,045 + MMP_RS02685 0.17 -4.8
Or see this region's nucleotide sequence