Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08280 and PGA1_c08290 are separated by 538 nucleotides PGA1_c08290 and PGA1_c08300 are separated by 81 nucleotides PGA1_c08300 and PGA1_c08310 overlap by 4 nucleotides
PGA1_c08280: PGA1_c08280 - Predicted thiol oxidoreductase, at 857,144 to 858,463
_c08280
PGA1_c08290: PGA1_c08290 - putative peptidase M75, at 859,002 to 860,270
_c08290
PGA1_c08300: PGA1_c08300 - hypothetical protein, at 860,352 to 860,858
_c08300
PGA1_c08310: PGA1_c08310 - Hemin uptake protein, at 860,855 to 861,040
_c08310
Position (kb) 859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 858.111 kb on + strand, within PGA1_c08280 at 858.190 kb on + strand, within PGA1_c08280 at 858.201 kb on + strand, within PGA1_c08280 at 858.247 kb on - strand, within PGA1_c08280 at 858.286 kb on + strand, within PGA1_c08280 at 858.294 kb on - strand, within PGA1_c08280 at 858.303 kb on + strand, within PGA1_c08280 at 858.334 kb on + strand at 858.334 kb on + strand at 858.363 kb on + strand at 858.376 kb on - strand at 858.423 kb on - strand at 858.428 kb on - strand at 858.487 kb on - strand at 858.495 kb on + strand at 858.495 kb on + strand at 858.595 kb on + strand at 858.603 kb on - strand at 858.603 kb on - strand at 858.603 kb on - strand at 858.605 kb on + strand at 858.660 kb on - strand at 858.670 kb on + strand at 858.675 kb on + strand at 858.689 kb on + strand at 858.724 kb on + strand at 858.830 kb on - strand at 858.830 kb on - strand at 858.841 kb on - strand at 858.871 kb on - strand at 858.936 kb on + strand at 859.126 kb on + strand at 859.209 kb on - strand, within PGA1_c08290 at 859.211 kb on + strand, within PGA1_c08290 at 859.415 kb on - strand, within PGA1_c08290 at 859.447 kb on - strand, within PGA1_c08290 at 859.454 kb on - strand, within PGA1_c08290 at 859.500 kb on - strand, within PGA1_c08290 at 859.658 kb on - strand, within PGA1_c08290 at 859.780 kb on + strand, within PGA1_c08290 at 859.794 kb on - strand, within PGA1_c08290 at 859.794 kb on - strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.858 kb on + strand, within PGA1_c08290 at 859.858 kb on + strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.886 kb on + strand, within PGA1_c08290 at 860.081 kb on - strand, within PGA1_c08290 at 860.103 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.145 kb on - strand at 860.147 kb on + strand at 860.178 kb on + strand at 860.186 kb on + strand at 860.186 kb on + strand at 860.186 kb on + strand at 860.268 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.308 kb on - strand at 860.323 kb on - strand at 860.323 kb on - strand at 860.323 kb on - strand at 860.463 kb on + strand, within PGA1_c08300 at 860.516 kb on + strand, within PGA1_c08300 at 860.572 kb on + strand, within PGA1_c08300 at 860.580 kb on - strand, within PGA1_c08300 at 860.584 kb on + strand, within PGA1_c08300 at 860.597 kb on - strand, within PGA1_c08300 at 860.597 kb on - strand, within PGA1_c08300 at 860.673 kb on + strand, within PGA1_c08300 at 860.681 kb on - strand, within PGA1_c08300 at 860.693 kb on - strand, within PGA1_c08300 at 860.743 kb on - strand, within PGA1_c08300 at 860.764 kb on + strand, within PGA1_c08300 at 860.804 kb on + strand, within PGA1_c08300 at 860.814 kb on + strand at 860.906 kb on - strand, within PGA1_c08310 at 860.906 kb on - strand, within PGA1_c08310 at 860.906 kb on - strand, within PGA1_c08310 at 860.989 kb on + strand, within PGA1_c08310 at 860.991 kb on + strand, within PGA1_c08310 at 860.992 kb on - strand, within PGA1_c08310 at 861.034 kb on + strand at 861.037 kb on - strand at 861.085 kb on + strand at 861.093 kb on - strand at 861.223 kb on - strand at 861.233 kb on + strand at 861.238 kb on + strand at 861.241 kb on - strand at 861.243 kb on + strand at 861.245 kb on + strand at 861.253 kb on + strand at 861.253 kb on - strand at 861.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 858,111 + PGA1_c08280 0.73 -1.2 858,190 + PGA1_c08280 0.79 -1.0 858,201 + PGA1_c08280 0.80 -0.7 858,247 - PGA1_c08280 0.84 -0.6 858,286 + PGA1_c08280 0.87 -0.5 858,294 - PGA1_c08280 0.87 +0.1 858,303 + PGA1_c08280 0.88 -0.2 858,334 + +0.2 858,334 + -1.1 858,363 + -0.3 858,376 - +0.5 858,423 - -1.3 858,428 - -0.1 858,487 - -0.6 858,495 + +0.6 858,495 + +0.9 858,595 + -0.8 858,603 - -0.5 858,603 - -0.3 858,603 - +0.6 858,605 + -1.0 858,660 - +0.1 858,670 + -0.2 858,675 + +0.6 858,689 + -0.2 858,724 + +0.1 858,830 - +0.3 858,830 - -0.3 858,841 - +0.5 858,871 - -1.3 858,936 + -0.5 859,126 + -0.2 859,209 - PGA1_c08290 0.16 -0.4 859,211 + PGA1_c08290 0.16 -0.3 859,415 - PGA1_c08290 0.33 -1.4 859,447 - PGA1_c08290 0.35 +0.4 859,454 - PGA1_c08290 0.36 -1.5 859,500 - PGA1_c08290 0.39 +0.2 859,658 - PGA1_c08290 0.52 -0.0 859,780 + PGA1_c08290 0.61 -0.2 859,794 - PGA1_c08290 0.62 -0.6 859,794 - PGA1_c08290 0.62 -0.9 859,853 + PGA1_c08290 0.67 +0.1 859,853 + PGA1_c08290 0.67 -0.1 859,853 + PGA1_c08290 0.67 +0.7 859,853 + PGA1_c08290 0.67 +0.0 859,858 + PGA1_c08290 0.67 -0.3 859,858 + PGA1_c08290 0.67 -0.2 859,861 - PGA1_c08290 0.68 +0.2 859,861 - PGA1_c08290 0.68 -0.2 859,861 - PGA1_c08290 0.68 -0.6 859,861 - PGA1_c08290 0.68 +0.7 859,886 + PGA1_c08290 0.70 -0.4 860,081 - PGA1_c08290 0.85 -1.7 860,103 + PGA1_c08290 0.87 -2.0 860,132 + PGA1_c08290 0.89 +0.5 860,132 + PGA1_c08290 0.89 -0.3 860,132 + PGA1_c08290 0.89 +0.8 860,140 - PGA1_c08290 0.90 -2.8 860,140 - PGA1_c08290 0.90 +0.6 860,140 - PGA1_c08290 0.90 +0.5 860,140 - PGA1_c08290 0.90 -0.2 860,140 - PGA1_c08290 0.90 +0.0 860,145 - -0.7 860,147 + -0.2 860,178 + -0.5 860,186 + -0.6 860,186 + +0.2 860,186 + +0.5 860,268 + +0.0 860,280 + +0.2 860,280 + +0.4 860,280 + +0.4 860,280 + +0.3 860,280 + +0.6 860,288 - -0.2 860,288 - +1.0 860,288 - -0.7 860,288 - -0.3 860,288 - -0.4 860,288 - +0.4 860,288 - +0.1 860,308 - -0.6 860,323 - -0.2 860,323 - +0.1 860,323 - -0.7 860,463 + PGA1_c08300 0.22 -0.2 860,516 + PGA1_c08300 0.32 -0.7 860,572 + PGA1_c08300 0.43 -0.3 860,580 - PGA1_c08300 0.45 -0.7 860,584 + PGA1_c08300 0.46 -0.3 860,597 - PGA1_c08300 0.48 -1.5 860,597 - PGA1_c08300 0.48 +0.3 860,673 + PGA1_c08300 0.63 -0.0 860,681 - PGA1_c08300 0.65 +0.3 860,693 - PGA1_c08300 0.67 -0.3 860,743 - PGA1_c08300 0.77 -0.3 860,764 + PGA1_c08300 0.81 -0.4 860,804 + PGA1_c08300 0.89 +0.2 860,814 + -1.1 860,906 - PGA1_c08310 0.27 -0.2 860,906 - PGA1_c08310 0.27 -1.6 860,906 - PGA1_c08310 0.27 -0.0 860,989 + PGA1_c08310 0.72 -0.8 860,991 + PGA1_c08310 0.73 -2.3 860,992 - PGA1_c08310 0.74 -1.0 861,034 + -0.6 861,037 - -1.1 861,085 + -1.7 861,093 - -0.4 861,223 - -2.7 861,233 + -0.7 861,238 + -1.5 861,241 - -1.8 861,243 + -1.6 861,245 + -0.2 861,253 + -1.2 861,253 - -1.5 861,261 - -1.2
Or see this region's nucleotide sequence