Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18355

Experiment: perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18350 and BWI76_RS18355 overlap by 4 nucleotidesBWI76_RS18355 and BWI76_RS18360 are separated by 15 nucleotides BWI76_RS18350: BWI76_RS18350 - L-cystine ABC transporter ATP-binding protein YecC, at 3,809,827 to 3,810,579 _RS18350 BWI76_RS18355: BWI76_RS18355 - amino acid ABC transporter permease, at 3,810,576 to 3,811,244 _RS18355 BWI76_RS18360: BWI76_RS18360 - aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein, at 3,811,260 to 3,812,246 _RS18360 Position (kb) 3810 3811 3812Strain fitness (log2 ratio) -1 0 1at 3809.695 kb on - strandat 3809.698 kb on + strandat 3809.698 kb on + strandat 3809.698 kb on + strandat 3809.706 kb on - strandat 3809.723 kb on + strandat 3809.723 kb on + strandat 3809.723 kb on + strandat 3809.723 kb on + strandat 3809.723 kb on - strandat 3809.731 kb on - strandat 3809.748 kb on - strandat 3809.791 kb on + strandat 3809.799 kb on - strandat 3809.806 kb on + strandat 3809.819 kb on - strandat 3809.861 kb on + strandat 3809.866 kb on + strandat 3810.023 kb on + strand, within BWI76_RS18350at 3810.198 kb on + strand, within BWI76_RS18350at 3810.276 kb on + strand, within BWI76_RS18350at 3810.324 kb on - strand, within BWI76_RS18350at 3810.357 kb on + strand, within BWI76_RS18350at 3810.365 kb on - strand, within BWI76_RS18350at 3810.437 kb on - strand, within BWI76_RS18350at 3810.518 kb on - strandat 3810.600 kb on + strandat 3810.724 kb on + strand, within BWI76_RS18355at 3810.737 kb on - strand, within BWI76_RS18355at 3811.005 kb on - strand, within BWI76_RS18355at 3811.173 kb on - strand, within BWI76_RS18355at 3811.226 kb on + strandat 3811.234 kb on - strandat 3811.286 kb on + strandat 3811.486 kb on + strand, within BWI76_RS18360at 3811.800 kb on - strand, within BWI76_RS18360at 3811.968 kb on - strand, within BWI76_RS18360

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 100 mM
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3,809,695 - +0.1
3,809,698 + -0.2
3,809,698 + -0.5
3,809,698 + +0.9
3,809,706 - -0.2
3,809,723 + -0.4
3,809,723 + +0.2
3,809,723 + +0.5
3,809,723 + +0.7
3,809,723 - +0.5
3,809,731 - +0.4
3,809,748 - +0.0
3,809,791 + -0.6
3,809,799 - -0.4
3,809,806 + +0.7
3,809,819 - +0.5
3,809,861 + -0.4
3,809,866 + +0.8
3,810,023 + BWI76_RS18350 0.26 +0.7
3,810,198 + BWI76_RS18350 0.49 -0.1
3,810,276 + BWI76_RS18350 0.60 -1.6
3,810,324 - BWI76_RS18350 0.66 -0.2
3,810,357 + BWI76_RS18350 0.70 -0.3
3,810,365 - BWI76_RS18350 0.71 +0.0
3,810,437 - BWI76_RS18350 0.81 +0.7
3,810,518 - -0.2
3,810,600 + +0.8
3,810,724 + BWI76_RS18355 0.22 +1.6
3,810,737 - BWI76_RS18355 0.24 +1.1
3,811,005 - BWI76_RS18355 0.64 -0.0
3,811,173 - BWI76_RS18355 0.89 +0.6
3,811,226 + -0.6
3,811,234 - +0.1
3,811,286 + +1.0
3,811,486 + BWI76_RS18360 0.23 -1.2
3,811,800 - BWI76_RS18360 0.55 -0.4
3,811,968 - BWI76_RS18360 0.72 -1.5

Or see this region's nucleotide sequence