Experiment: perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17865 and BWI76_RS17870 are separated by 3 nucleotides BWI76_RS17870 and BWI76_RS17875 are separated by 162 nucleotides BWI76_RS17875 and BWI76_RS17880 are separated by 131 nucleotides
BWI76_RS17865: BWI76_RS17865 - aminodeoxychorismate synthase subunit I, at 3,714,375 to 3,715,730
_RS17865
BWI76_RS17870: BWI76_RS17870 - coenzyme A pyrophosphatase, at 3,715,734 to 3,716,312
_RS17870
BWI76_RS17875: BWI76_RS17875 - L-serine ammonia-lyase, at 3,716,475 to 3,717,839
_RS17875
BWI76_RS17880: BWI76_RS17880 - c-di-GMP phosphodiesterase, at 3,717,971 to 3,719,536
_RS17880
Position (kb)
3716
3717
3718 Strain fitness (log2 ratio)
-2
-1
0
1 at 3715.940 kb on + strand, within BWI76_RS17870 at 3715.964 kb on - strand, within BWI76_RS17870 at 3716.079 kb on - strand, within BWI76_RS17870 at 3716.091 kb on - strand, within BWI76_RS17870 at 3716.219 kb on + strand, within BWI76_RS17870 at 3716.236 kb on - strand, within BWI76_RS17870 at 3716.320 kb on - strand at 3717.066 kb on + strand, within BWI76_RS17875 at 3717.504 kb on + strand, within BWI76_RS17875 at 3717.569 kb on - strand, within BWI76_RS17875 at 3717.635 kb on + strand, within BWI76_RS17875 at 3717.723 kb on + strand at 3717.799 kb on - strand at 3717.915 kb on - strand at 3718.082 kb on - strand at 3718.178 kb on + strand, within BWI76_RS17880 at 3718.401 kb on + strand, within BWI76_RS17880 at 3718.667 kb on - strand, within BWI76_RS17880
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 100 mM remove 3,715,940 + BWI76_RS17870 0.36 -1.3 3,715,964 - BWI76_RS17870 0.40 +0.6 3,716,079 - BWI76_RS17870 0.60 -0.5 3,716,091 - BWI76_RS17870 0.62 +0.3 3,716,219 + BWI76_RS17870 0.84 +0.1 3,716,236 - BWI76_RS17870 0.87 +0.3 3,716,320 - +0.8 3,717,066 + BWI76_RS17875 0.43 -0.5 3,717,504 + BWI76_RS17875 0.75 -1.8 3,717,569 - BWI76_RS17875 0.80 -1.0 3,717,635 + BWI76_RS17875 0.85 -1.1 3,717,723 + -1.3 3,717,799 - +1.5 3,717,915 - -0.2 3,718,082 - -0.2 3,718,178 + BWI76_RS17880 0.13 -0.3 3,718,401 + BWI76_RS17880 0.27 +0.5 3,718,667 - BWI76_RS17880 0.44 -0.1
Or see this region's nucleotide sequence