Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05170

Experiment: perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05160 and BWI76_RS05165 are separated by 180 nucleotidesBWI76_RS05165 and BWI76_RS05170 overlap by 8 nucleotidesBWI76_RS05170 and BWI76_RS05175 are separated by 84 nucleotides BWI76_RS05160: BWI76_RS05160 - hypothetical protein, at 1,085,568 to 1,086,191 _RS05160 BWI76_RS05165: BWI76_RS05165 - cobalamin-binding protein, at 1,086,372 to 1,087,172 _RS05165 BWI76_RS05170: BWI76_RS05170 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 1,087,165 to 1,087,863 _RS05170 BWI76_RS05175: BWI76_RS05175 - dGTPase, at 1,087,948 to 1,089,462 _RS05175 Position (kb) 1087 1088Strain fitness (log2 ratio) -2 -1 0 1at 1086.174 kb on - strandat 1086.197 kb on + strandat 1086.204 kb on + strandat 1086.306 kb on + strandat 1086.314 kb on - strandat 1086.399 kb on + strandat 1086.425 kb on - strandat 1086.445 kb on - strandat 1086.540 kb on + strand, within BWI76_RS05165at 1086.566 kb on + strand, within BWI76_RS05165at 1086.574 kb on - strand, within BWI76_RS05165at 1086.666 kb on + strand, within BWI76_RS05165at 1087.021 kb on + strand, within BWI76_RS05165at 1087.094 kb on - strandat 1087.133 kb on + strandat 1088.154 kb on + strand, within BWI76_RS05175at 1088.156 kb on + strand, within BWI76_RS05175at 1088.172 kb on - strand, within BWI76_RS05175at 1088.500 kb on - strand, within BWI76_RS05175at 1088.501 kb on + strand, within BWI76_RS05175at 1088.506 kb on + strand, within BWI76_RS05175at 1088.506 kb on + strand, within BWI76_RS05175at 1088.506 kb on + strand, within BWI76_RS05175at 1088.506 kb on + strand, within BWI76_RS05175at 1088.506 kb on + strand, within BWI76_RS05175at 1088.513 kb on + strand, within BWI76_RS05175at 1088.514 kb on - strand, within BWI76_RS05175at 1088.526 kb on + strand, within BWI76_RS05175at 1088.532 kb on - strand, within BWI76_RS05175at 1088.553 kb on - strand, within BWI76_RS05175at 1088.560 kb on + strand, within BWI76_RS05175at 1088.563 kb on - strand, within BWI76_RS05175at 1088.568 kb on - strand, within BWI76_RS05175at 1088.593 kb on + strand, within BWI76_RS05175at 1088.606 kb on + strand, within BWI76_RS05175at 1088.682 kb on + strandat 1088.683 kb on - strand, within BWI76_RS05175at 1088.687 kb on + strand, within BWI76_RS05175at 1088.692 kb on + strand, within BWI76_RS05175at 1088.693 kb on + strand, within BWI76_RS05175at 1088.693 kb on + strand, within BWI76_RS05175at 1088.693 kb on - strand, within BWI76_RS05175at 1088.698 kb on + strand, within BWI76_RS05175at 1088.700 kb on - strand, within BWI76_RS05175at 1088.718 kb on + strand, within BWI76_RS05175at 1088.726 kb on - strand, within BWI76_RS05175at 1088.733 kb on + strand, within BWI76_RS05175at 1088.749 kb on + strand, within BWI76_RS05175at 1088.754 kb on - strand, within BWI76_RS05175at 1088.807 kb on + strand, within BWI76_RS05175at 1088.807 kb on + strand, within BWI76_RS05175at 1088.807 kb on + strand, within BWI76_RS05175at 1088.810 kb on - strand, within BWI76_RS05175at 1088.815 kb on - strand, within BWI76_RS05175at 1088.815 kb on - strand, within BWI76_RS05175at 1088.815 kb on - strand, within BWI76_RS05175at 1088.817 kb on + strand, within BWI76_RS05175at 1088.820 kb on - strand, within BWI76_RS05175at 1088.824 kb on - strand, within BWI76_RS05175at 1088.829 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.838 kb on + strand, within BWI76_RS05175at 1088.840 kb on + strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strandat 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175at 1088.846 kb on - strand, within BWI76_RS05175

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 100 mM
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1,086,174 - +1.3
1,086,197 + +0.7
1,086,204 + -0.1
1,086,306 + -0.6
1,086,314 - +0.7
1,086,399 + +0.1
1,086,425 - -0.6
1,086,445 - -0.3
1,086,540 + BWI76_RS05165 0.21 -1.1
1,086,566 + BWI76_RS05165 0.24 +0.2
1,086,574 - BWI76_RS05165 0.25 -0.4
1,086,666 + BWI76_RS05165 0.37 +0.6
1,087,021 + BWI76_RS05165 0.81 -0.4
1,087,094 - +1.4
1,087,133 + -0.8
1,088,154 + BWI76_RS05175 0.14 -0.1
1,088,156 + BWI76_RS05175 0.14 +0.2
1,088,172 - BWI76_RS05175 0.15 -2.0
1,088,500 - BWI76_RS05175 0.36 +0.3
1,088,501 + BWI76_RS05175 0.37 -1.1
1,088,506 + BWI76_RS05175 0.37 +0.1
1,088,506 + BWI76_RS05175 0.37 +0.5
1,088,506 + BWI76_RS05175 0.37 +0.0
1,088,506 + BWI76_RS05175 0.37 -0.2
1,088,506 + BWI76_RS05175 0.37 -0.1
1,088,513 + BWI76_RS05175 0.37 -0.9
1,088,514 - BWI76_RS05175 0.37 +0.4
1,088,526 + BWI76_RS05175 0.38 -0.0
1,088,532 - BWI76_RS05175 0.39 +0.2
1,088,553 - BWI76_RS05175 0.40 -0.4
1,088,560 + BWI76_RS05175 0.40 -0.1
1,088,563 - BWI76_RS05175 0.41 -0.4
1,088,568 - BWI76_RS05175 0.41 +0.3
1,088,593 + BWI76_RS05175 0.43 -0.3
1,088,606 + BWI76_RS05175 0.43 -2.7
1,088,682 + -0.4
1,088,683 - BWI76_RS05175 0.49 -0.1
1,088,687 + BWI76_RS05175 0.49 +0.2
1,088,692 + BWI76_RS05175 0.49 -1.1
1,088,693 + BWI76_RS05175 0.49 -1.8
1,088,693 + BWI76_RS05175 0.49 +0.1
1,088,693 - BWI76_RS05175 0.49 +0.2
1,088,698 + BWI76_RS05175 0.50 +0.0
1,088,700 - BWI76_RS05175 0.50 -1.7
1,088,718 + BWI76_RS05175 0.51 +0.3
1,088,726 - BWI76_RS05175 0.51 +0.1
1,088,733 + BWI76_RS05175 0.52 -0.9
1,088,749 + BWI76_RS05175 0.53 +1.0
1,088,754 - BWI76_RS05175 0.53 +0.3
1,088,807 + BWI76_RS05175 0.57 +0.1
1,088,807 + BWI76_RS05175 0.57 +0.7
1,088,807 + BWI76_RS05175 0.57 -0.3
1,088,810 - BWI76_RS05175 0.57 +0.3
1,088,815 - BWI76_RS05175 0.57 +0.4
1,088,815 - BWI76_RS05175 0.57 -0.7
1,088,815 - BWI76_RS05175 0.57 -0.8
1,088,817 + BWI76_RS05175 0.57 +0.4
1,088,820 - BWI76_RS05175 0.58 +0.3
1,088,824 - BWI76_RS05175 0.58 -0.2
1,088,829 + BWI76_RS05175 0.58 -1.2
1,088,838 + BWI76_RS05175 0.59 +0.2
1,088,838 + BWI76_RS05175 0.59 -0.7
1,088,838 + BWI76_RS05175 0.59 +0.5
1,088,838 + BWI76_RS05175 0.59 -0.2
1,088,838 + BWI76_RS05175 0.59 +0.2
1,088,838 + BWI76_RS05175 0.59 -0.1
1,088,838 + BWI76_RS05175 0.59 -0.3
1,088,838 + BWI76_RS05175 0.59 +0.6
1,088,838 + BWI76_RS05175 0.59 +0.3
1,088,838 + BWI76_RS05175 0.59 -1.1
1,088,840 + BWI76_RS05175 0.59 +1.0
1,088,846 - BWI76_RS05175 0.59 +0.6
1,088,846 - BWI76_RS05175 0.59 -0.1
1,088,846 - +0.6
1,088,846 - BWI76_RS05175 0.59 -0.9
1,088,846 - BWI76_RS05175 0.59 +1.0
1,088,846 - BWI76_RS05175 0.59 -0.4
1,088,846 - BWI76_RS05175 0.59 -1.0
1,088,846 - BWI76_RS05175 0.59 +1.0
1,088,846 - BWI76_RS05175 0.59 -0.5
1,088,846 - BWI76_RS05175 0.59 -0.6
1,088,846 - BWI76_RS05175 0.59 -0.1
1,088,846 - BWI76_RS05175 0.59 +0.0

Or see this region's nucleotide sequence