Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2679

Experiment: MoLS4 with Chlorite 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2678 and DvMF_2679 are separated by 294 nucleotidesDvMF_2679 and DvMF_2680 are separated by 996 nucleotides DvMF_2678: DvMF_2678 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,382,609 to 3,384,705 _2678 DvMF_2679: DvMF_2679 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,385,000 to 3,386,460 _2679 DvMF_2680: DvMF_2680 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 3,387,457 to 3,388,110 _2680 Position (kb) 3384 3385 3386 3387Strain fitness (log2 ratio) -3 -2 -1 0 1at 3384.463 kb on + strand, within DvMF_2678at 3384.567 kb on - strandat 3384.845 kb on + strandat 3384.876 kb on - strandat 3385.029 kb on + strandat 3385.183 kb on - strand, within DvMF_2679at 3385.194 kb on + strand, within DvMF_2679at 3385.396 kb on + strand, within DvMF_2679at 3385.542 kb on + strand, within DvMF_2679at 3385.657 kb on + strand, within DvMF_2679at 3385.670 kb on - strand, within DvMF_2679at 3385.908 kb on + strand, within DvMF_2679at 3385.986 kb on + strand, within DvMF_2679at 3386.471 kb on - strandat 3386.960 kb on + strandat 3387.276 kb on + strandat 3387.314 kb on + strandat 3387.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM
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3,384,463 + DvMF_2678 0.88 -1.2
3,384,567 - -1.4
3,384,845 + -0.6
3,384,876 - +0.6
3,385,029 + -1.4
3,385,183 - DvMF_2679 0.13 -0.9
3,385,194 + DvMF_2679 0.13 -2.8
3,385,396 + DvMF_2679 0.27 -1.4
3,385,542 + DvMF_2679 0.37 -0.0
3,385,657 + DvMF_2679 0.45 -1.8
3,385,670 - DvMF_2679 0.46 +0.6
3,385,908 + DvMF_2679 0.62 -0.8
3,385,986 + DvMF_2679 0.67 -1.6
3,386,471 - -0.4
3,386,960 + -0.4
3,387,276 + -0.6
3,387,314 + -0.4
3,387,330 - -0.4

Or see this region's nucleotide sequence