Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2396

Experiment: MoLS4 with Chlorite 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2395 and DvMF_2396 are separated by 146 nucleotidesDvMF_2396 and DvMF_2397 are separated by 151 nucleotides DvMF_2395: DvMF_2395 - glycosyl transferase, group 2 family protein (RefSeq), at 3,027,028 to 3,028,716 _2395 DvMF_2396: DvMF_2396 - carbonic anhydrase (RefSeq), at 3,028,863 to 3,029,594 _2396 DvMF_2397: DvMF_2397 - hypothetical protein (RefSeq), at 3,029,746 to 3,030,570 _2397 Position (kb) 3028 3029 3030Strain fitness (log2 ratio) -1 0 1at 3028.097 kb on + strand, within DvMF_2395at 3028.117 kb on - strand, within DvMF_2395at 3028.432 kb on + strand, within DvMF_2395at 3028.682 kb on + strandat 3029.096 kb on - strand, within DvMF_2396at 3029.156 kb on - strand, within DvMF_2396at 3029.354 kb on - strand, within DvMF_2396at 3029.401 kb on - strand, within DvMF_2396at 3029.519 kb on + strand, within DvMF_2396at 3030.459 kb on + strand, within DvMF_2397at 3030.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM
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3,028,097 + DvMF_2395 0.63 -0.0
3,028,117 - DvMF_2395 0.64 -0.6
3,028,432 + DvMF_2395 0.83 +0.3
3,028,682 + -0.2
3,029,096 - DvMF_2396 0.32 -1.2
3,029,156 - DvMF_2396 0.40 -0.7
3,029,354 - DvMF_2396 0.67 -0.3
3,029,401 - DvMF_2396 0.73 -0.2
3,029,519 + DvMF_2396 0.90 -0.7
3,030,459 + DvMF_2397 0.86 -0.9
3,030,589 - -0.2

Or see this region's nucleotide sequence