Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2150

Experiment: MoLS4 with Chlorite 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2149 and DvMF_2150 are separated by 175 nucleotidesDvMF_2150 and DvMF_2151 are separated by 309 nucleotides DvMF_2149: DvMF_2149 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,677,753 to 2,679,186 _2149 DvMF_2150: DvMF_2150 - glycosyl transferase family 2 (RefSeq), at 2,679,362 to 2,680,270 _2150 DvMF_2151: DvMF_2151 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,680,580 to 2,681,272 _2151 Position (kb) 2679 2680 2681Strain fitness (log2 ratio) -1 0 1 2at 2678.554 kb on - strand, within DvMF_2149at 2678.821 kb on - strand, within DvMF_2149at 2679.020 kb on + strand, within DvMF_2149at 2679.463 kb on - strand, within DvMF_2150at 2679.495 kb on + strand, within DvMF_2150at 2679.503 kb on - strand, within DvMF_2150at 2679.847 kb on + strand, within DvMF_2150at 2679.984 kb on + strand, within DvMF_2150at 2680.189 kb on - strandat 2680.228 kb on + strandat 2680.387 kb on - strandat 2680.777 kb on + strand, within DvMF_2151at 2680.818 kb on + strand, within DvMF_2151at 2680.844 kb on - strand, within DvMF_2151at 2681.008 kb on - strand, within DvMF_2151at 2681.258 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM
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2,678,554 - DvMF_2149 0.56 -0.7
2,678,821 - DvMF_2149 0.74 -0.5
2,679,020 + DvMF_2149 0.88 -1.0
2,679,463 - DvMF_2150 0.11 -1.1
2,679,495 + DvMF_2150 0.15 +0.2
2,679,503 - DvMF_2150 0.16 -0.3
2,679,847 + DvMF_2150 0.53 -0.1
2,679,984 + DvMF_2150 0.68 +2.1
2,680,189 - -0.4
2,680,228 + -0.3
2,680,387 - -0.4
2,680,777 + DvMF_2151 0.28 -0.2
2,680,818 + DvMF_2151 0.34 -0.6
2,680,844 - DvMF_2151 0.38 -0.2
2,681,008 - DvMF_2151 0.62 +0.4
2,681,258 + -0.1

Or see this region's nucleotide sequence