Experiment: MoLS4 with Chlorite 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1826 and DvMF_1827 are separated by 3 nucleotides DvMF_1827 and DvMF_1828 are separated by 1 nucleotides DvMF_1828 and DvMF_1829 are separated by 567 nucleotides
DvMF_1826: DvMF_1826 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,228,497 to 2,229,498
_1826
DvMF_1827: DvMF_1827 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,229,502 to 2,230,422
_1827
DvMF_1828: DvMF_1828 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,230,424 to 2,231,401
_1828
DvMF_1829: DvMF_1829 - extracellular solute-binding protein family 5 (RefSeq), at 2,231,969 to 2,233,531
_1829
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-1
0
1 at 2229.665 kb on + strand, within DvMF_1827 at 2229.761 kb on - strand, within DvMF_1827 at 2229.962 kb on - strand, within DvMF_1827 at 2230.161 kb on - strand, within DvMF_1827 at 2230.328 kb on + strand, within DvMF_1827 at 2230.472 kb on - strand at 2230.607 kb on + strand, within DvMF_1828 at 2230.701 kb on - strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.727 kb on - strand, within DvMF_1828 at 2231.494 kb on - strand at 2231.696 kb on + strand at 2231.883 kb on + strand at 2232.017 kb on - strand at 2232.059 kb on - strand at 2232.137 kb on - strand, within DvMF_1829 at 2232.336 kb on + strand, within DvMF_1829
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM remove 2,229,665 + DvMF_1827 0.18 -0.5 2,229,761 - DvMF_1827 0.28 +0.3 2,229,962 - DvMF_1827 0.50 +0.2 2,230,161 - DvMF_1827 0.72 +0.3 2,230,328 + DvMF_1827 0.90 +0.4 2,230,472 - +0.1 2,230,607 + DvMF_1828 0.19 +0.3 2,230,701 - DvMF_1828 0.28 +0.4 2,230,719 + DvMF_1828 0.30 +0.4 2,230,719 + DvMF_1828 0.30 +0.3 2,230,719 + DvMF_1828 0.30 +0.2 2,230,727 - DvMF_1828 0.31 +0.4 2,231,494 - -0.2 2,231,696 + +0.0 2,231,883 + -0.2 2,232,017 - -0.3 2,232,059 - +0.2 2,232,137 - DvMF_1829 0.11 +0.5 2,232,336 + DvMF_1829 0.23 -0.6
Or see this region's nucleotide sequence