Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1477

Experiment: MoLS4 with Chlorite 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1475 and DvMF_1476 are separated by 353 nucleotidesDvMF_1476 and DvMF_1477 overlap by 14 nucleotidesDvMF_1477 and DvMF_1478 are separated by 406 nucleotides DvMF_1475: DvMF_1475 - hypothetical protein (RefSeq), at 1,808,491 to 1,808,943 _1475 DvMF_1476: DvMF_1476 - protein of unknown function DUF486 (RefSeq), at 1,809,297 to 1,809,656 _1476 DvMF_1477: DvMF_1477 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,809,643 to 1,811,835 _1477 DvMF_1478: DvMF_1478 - Extracellular ligand-binding receptor (RefSeq), at 1,812,242 to 1,813,459 _1478 Position (kb) 1809 1810 1811 1812Strain fitness (log2 ratio) -1 0 1at 1808.971 kb on - strandat 1808.983 kb on - strandat 1809.460 kb on + strand, within DvMF_1476at 1809.699 kb on + strandat 1809.810 kb on + strandat 1809.830 kb on - strandat 1809.830 kb on - strandat 1809.904 kb on - strand, within DvMF_1477at 1810.122 kb on - strand, within DvMF_1477at 1810.327 kb on + strand, within DvMF_1477at 1810.783 kb on - strand, within DvMF_1477at 1810.858 kb on + strand, within DvMF_1477at 1810.866 kb on - strand, within DvMF_1477at 1810.945 kb on - strand, within DvMF_1477at 1811.252 kb on + strand, within DvMF_1477at 1811.392 kb on + strand, within DvMF_1477at 1811.537 kb on + strand, within DvMF_1477at 1811.967 kb on - strandat 1811.985 kb on + strandat 1811.993 kb on - strandat 1812.181 kb on + strandat 1812.267 kb on + strandat 1812.393 kb on - strandat 1812.417 kb on + strand, within DvMF_1478at 1812.425 kb on - strand, within DvMF_1478at 1812.494 kb on - strand, within DvMF_1478at 1812.762 kb on + strand, within DvMF_1478

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM
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1,808,971 - -0.4
1,808,983 - -0.7
1,809,460 + DvMF_1476 0.45 -0.5
1,809,699 + -0.0
1,809,810 + +1.0
1,809,830 - +0.1
1,809,830 - +0.3
1,809,904 - DvMF_1477 0.12 +0.2
1,810,122 - DvMF_1477 0.22 +0.2
1,810,327 + DvMF_1477 0.31 +0.2
1,810,783 - DvMF_1477 0.52 +0.2
1,810,858 + DvMF_1477 0.55 +0.4
1,810,866 - DvMF_1477 0.56 +0.2
1,810,945 - DvMF_1477 0.59 +0.4
1,811,252 + DvMF_1477 0.73 +0.6
1,811,392 + DvMF_1477 0.80 +0.6
1,811,537 + DvMF_1477 0.86 +0.4
1,811,967 - -0.1
1,811,985 + +0.0
1,811,993 - +0.3
1,812,181 + -0.4
1,812,267 + -0.2
1,812,393 - -0.1
1,812,417 + DvMF_1478 0.14 -0.4
1,812,425 - DvMF_1478 0.15 -0.2
1,812,494 - DvMF_1478 0.21 -0.4
1,812,762 + DvMF_1478 0.43 -0.3

Or see this region's nucleotide sequence