Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1127

Experiment: MoLS4 with Chlorite 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1126 and DvMF_1127 are separated by 4 nucleotidesDvMF_1127 and DvMF_1128 are separated by 174 nucleotidesDvMF_1128 and DvMF_1129 are separated by 55 nucleotides DvMF_1126: DvMF_1126 - FAD dependent oxidoreductase (RefSeq), at 1,382,807 to 1,383,985 _1126 DvMF_1127: DvMF_1127 - succinate dehydrogenase and fumarate reductase iron-sulfur protein (RefSeq), at 1,383,990 to 1,384,883 _1127 DvMF_1128: DvMF_1128 - YbaK/prolyl-tRNA synthetase associated region (RefSeq), at 1,385,058 to 1,385,573 _1128 DvMF_1129: DvMF_1129 - two component transcriptional regulator, LuxR family (RefSeq), at 1,385,629 to 1,386,324 _1129 Position (kb) 1383 1384 1385Strain fitness (log2 ratio) -1 0 1at 1383.150 kb on + strand, within DvMF_1126at 1383.315 kb on + strand, within DvMF_1126at 1383.643 kb on - strand, within DvMF_1126at 1383.861 kb on + strand, within DvMF_1126at 1383.867 kb on - strand, within DvMF_1126at 1384.099 kb on + strand, within DvMF_1127at 1384.168 kb on + strand, within DvMF_1127at 1384.237 kb on - strand, within DvMF_1127at 1384.296 kb on + strand, within DvMF_1127at 1384.302 kb on + strand, within DvMF_1127at 1384.317 kb on - strand, within DvMF_1127at 1384.347 kb on - strand, within DvMF_1127at 1384.505 kb on - strand, within DvMF_1127at 1384.573 kb on + strand, within DvMF_1127at 1384.830 kb on - strandat 1384.841 kb on - strandat 1384.850 kb on - strandat 1385.002 kb on - strandat 1385.116 kb on - strand, within DvMF_1128at 1385.116 kb on - strand, within DvMF_1128at 1385.116 kb on - strand, within DvMF_1128at 1385.221 kb on - strand, within DvMF_1128at 1385.221 kb on - strand, within DvMF_1128at 1385.576 kb on - strandat 1385.637 kb on + strandat 1385.640 kb on - strandat 1385.824 kb on + strand, within DvMF_1129

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM
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1,383,150 + DvMF_1126 0.29 -0.7
1,383,315 + DvMF_1126 0.43 -0.3
1,383,643 - DvMF_1126 0.71 -1.4
1,383,861 + DvMF_1126 0.89 -0.5
1,383,867 - DvMF_1126 0.90 +0.7
1,384,099 + DvMF_1127 0.12 -0.5
1,384,168 + DvMF_1127 0.20 +0.2
1,384,237 - DvMF_1127 0.28 -0.4
1,384,296 + DvMF_1127 0.34 -0.3
1,384,302 + DvMF_1127 0.35 -0.2
1,384,317 - DvMF_1127 0.37 -0.2
1,384,347 - DvMF_1127 0.40 -0.3
1,384,505 - DvMF_1127 0.58 +0.8
1,384,573 + DvMF_1127 0.65 -0.3
1,384,830 - +0.1
1,384,841 - -1.5
1,384,850 - -0.2
1,385,002 - -0.3
1,385,116 - DvMF_1128 0.11 -0.3
1,385,116 - DvMF_1128 0.11 -0.8
1,385,116 - DvMF_1128 0.11 -0.2
1,385,221 - DvMF_1128 0.32 -0.1
1,385,221 - DvMF_1128 0.32 -0.3
1,385,576 - -0.1
1,385,637 + -0.3
1,385,640 - -0.4
1,385,824 + DvMF_1129 0.28 -0.4

Or see this region's nucleotide sequence