Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0572

Experiment: MoLS4 with Chlorite 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0571 and DvMF_0572 are separated by 227 nucleotidesDvMF_0572 and DvMF_0573 are separated by 279 nucleotides DvMF_0571: DvMF_0571 - outer membrane autotransporter barrel domain protein (RefSeq), at 675,004 to 676,917 _0571 DvMF_0572: DvMF_0572 - Threonine aldolase (RefSeq), at 677,145 to 678,170 _0572 DvMF_0573: DvMF_0573 - glycosyl transferase group 1 (RefSeq), at 678,450 to 679,835 _0573 Position (kb) 677 678 679Strain fitness (log2 ratio) -1 0 1at 676.191 kb on + strand, within DvMF_0571at 676.420 kb on + strand, within DvMF_0571at 676.538 kb on + strand, within DvMF_0571at 676.546 kb on - strand, within DvMF_0571at 676.737 kb on - strandat 676.781 kb on + strandat 676.781 kb on + strandat 676.979 kb on - strandat 677.117 kb on + strandat 678.055 kb on + strand, within DvMF_0572at 678.055 kb on + strand, within DvMF_0572at 678.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM
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676,191 + DvMF_0571 0.62 -0.1
676,420 + DvMF_0571 0.74 -0.6
676,538 + DvMF_0571 0.80 -0.7
676,546 - DvMF_0571 0.81 -1.1
676,737 - -0.8
676,781 + -0.3
676,781 + -0.2
676,979 - -0.4
677,117 + +0.1
678,055 + DvMF_0572 0.89 -0.0
678,055 + DvMF_0572 0.89 +0.5
678,384 + -0.7

Or see this region's nucleotide sequence