Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0523

Experiment: MoLS4 with Chlorite 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0522 and DvMF_0523 are separated by 144 nucleotidesDvMF_0523 and DvMF_0524 are separated by 444 nucleotides DvMF_0522: DvMF_0522 - ABC transporter related (RefSeq), at 615,628 to 616,377 _0522 DvMF_0523: DvMF_0523 - magnesium transporter (RefSeq), at 616,522 to 617,925 _0523 DvMF_0524: DvMF_0524 - nicotinate-nucleotide pyrophosphorylase (RefSeq), at 618,370 to 619,278 _0524 Position (kb) 616 617 618Strain fitness (log2 ratio) -1 0 1at 615.614 kb on + strandat 615.962 kb on + strand, within DvMF_0522at 615.972 kb on + strand, within DvMF_0522at 615.990 kb on - strand, within DvMF_0522at 616.037 kb on + strand, within DvMF_0522at 616.206 kb on - strand, within DvMF_0522at 616.224 kb on - strand, within DvMF_0522at 616.229 kb on - strand, within DvMF_0522at 616.250 kb on + strand, within DvMF_0522at 616.358 kb on + strandat 616.415 kb on + strandat 616.417 kb on - strandat 616.527 kb on + strandat 616.763 kb on - strand, within DvMF_0523at 617.156 kb on + strand, within DvMF_0523at 617.324 kb on + strand, within DvMF_0523at 617.460 kb on - strand, within DvMF_0523at 617.725 kb on - strand, within DvMF_0523at 617.901 kb on - strandat 617.921 kb on + strandat 618.057 kb on + strandat 618.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM
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615,614 + -0.3
615,962 + DvMF_0522 0.45 -0.3
615,972 + DvMF_0522 0.46 -0.2
615,990 - DvMF_0522 0.48 +0.1
616,037 + DvMF_0522 0.55 +0.1
616,206 - DvMF_0522 0.77 -1.1
616,224 - DvMF_0522 0.79 +0.1
616,229 - DvMF_0522 0.80 +0.3
616,250 + DvMF_0522 0.83 -0.6
616,358 + -0.2
616,415 + -0.1
616,417 - -0.2
616,527 + -0.7
616,763 - DvMF_0523 0.17 -1.5
617,156 + DvMF_0523 0.45 -0.4
617,324 + DvMF_0523 0.57 -0.6
617,460 - DvMF_0523 0.67 -1.3
617,725 - DvMF_0523 0.86 -1.0
617,901 - -0.3
617,921 + -0.1
618,057 + -0.6
618,270 + +0.2

Or see this region's nucleotide sequence