Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0118

Experiment: MoLS4 with Chlorite 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0117 and DvMF_0118 overlap by 1 nucleotidesDvMF_0118 and DvMF_0119 are separated by 6 nucleotides DvMF_0117: DvMF_0117 - ABC-3 protein (RefSeq), at 127,653 to 128,483 _0117 DvMF_0118: DvMF_0118 - ABC transporter related (RefSeq), at 128,483 to 129,409 _0118 DvMF_0119: DvMF_0119 - periplasmic solute binding protein (RefSeq), at 129,416 to 130,450 _0119 Position (kb) 128 129 130Strain fitness (log2 ratio) -1 0 1 2at 127.488 kb on - strandat 127.597 kb on + strandat 127.719 kb on - strandat 127.719 kb on - strandat 127.778 kb on + strand, within DvMF_0117at 128.111 kb on + strand, within DvMF_0117at 128.303 kb on - strand, within DvMF_0117at 128.310 kb on + strand, within DvMF_0117at 128.390 kb on + strand, within DvMF_0117at 128.702 kb on + strand, within DvMF_0118at 128.712 kb on - strand, within DvMF_0118at 128.734 kb on - strand, within DvMF_0118at 128.784 kb on - strand, within DvMF_0118at 128.784 kb on - strand, within DvMF_0118at 128.802 kb on + strand, within DvMF_0118at 129.442 kb on - strandat 129.493 kb on - strandat 129.582 kb on + strand, within DvMF_0119at 129.676 kb on + strand, within DvMF_0119at 129.684 kb on - strand, within DvMF_0119at 129.767 kb on + strand, within DvMF_0119at 129.767 kb on + strand, within DvMF_0119at 129.843 kb on + strand, within DvMF_0119at 130.103 kb on - strand, within DvMF_0119

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 12.5 mM
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127,488 - -0.6
127,597 + -0.4
127,719 - -0.0
127,719 - -0.6
127,778 + DvMF_0117 0.15 +0.2
128,111 + DvMF_0117 0.55 -0.6
128,303 - DvMF_0117 0.78 +2.6
128,310 + DvMF_0117 0.79 -1.0
128,390 + DvMF_0117 0.89 -0.7
128,702 + DvMF_0118 0.24 -0.0
128,712 - DvMF_0118 0.25 -1.4
128,734 - DvMF_0118 0.27 -0.5
128,784 - DvMF_0118 0.32 -0.3
128,784 - DvMF_0118 0.32 -0.2
128,802 + DvMF_0118 0.34 -0.4
129,442 - -0.2
129,493 - +0.2
129,582 + DvMF_0119 0.16 -0.0
129,676 + DvMF_0119 0.25 -0.5
129,684 - DvMF_0119 0.26 -0.2
129,767 + DvMF_0119 0.34 +0.3
129,767 + DvMF_0119 0.34 -0.5
129,843 + DvMF_0119 0.41 -0.2
130,103 - DvMF_0119 0.66 -0.2

Or see this region's nucleotide sequence